Non-Coding RNA Search

Ss1.1-Pig2-128K06.5

Sequence:


               
               CCTTAACCTGCTGAGCCATAGTGG------------------------------------
------------------------------------------------------------
------------TGAGTGGGTCTATGTTCTAATGGGGGTTATGGAGGTAGTGTTGTGTGC
GTGTGCAATGCGTGTGAGAGAATGAATTCTCCTCTTGTGGAAGTGCTCACACCCCACAGT
CCCTTGCTGTGTTCCTTCACCCTGCATAACTCAGTCTTGTCATTTGTGAAATGGAGCTCC
CTGAGGAGGGATTGAGATCACATGTATCTGGCAGTCAACAATGATGTGGCACATTCCAAG
GGTCCAACAAAGGGCATCTATCATTTCCCGGGAGCCCCCTTTTCTCCACCAGGGGTGTCA
GGATGATTCCCTCATTGGGTTCCCACTCTCTGACCCCCACCCTCCCCGCAGACCCTCTTC
CAGAGCCCAGAGGAAGGCTGGCAGCTGTACACCTCGGCCCAGGCTCCTGATGGAAAATGC
ATCTGCACAGCTGTGATCCCTGCACAGAGCACTTGCTCTCGAGATGGCCGGAGCCGGGAG
CTGCGGCAGCTGATGGAGAAGGTTCAGAACGTGTCCCAGTCCATGGAGGTCCTTGAGTTG
CGGACCTACCGTGACCTCCAGTACGTACGCAGCATGGAGACCCTCATGCGGAGCCTGGAT
GCGCGGCTCCGGGCAGCCGATGGGTCCCTCTCGGCCAAGAGCTTCCAGGAGCTGAAGGAC
AGGATGACCGAGCTGTTGCCGCTGAGCTCAGTCCTGGAGCAGTACAAGGCCGACACGCGG
ACCATCGTCCGCCTGCGGGAGGAGGTGAGGAATCTCTCTGGCAGCCTAGCAGCCATCCAG
GAGGAGATGGGCGCCTACGGGTACGAGGACCTGCAGCAGCGGGTGATGGCCCTGGAGGCT
CGGCTCCATGCCTGCGCCCAGAAGCTGGGTTGCGGGAAGCTGACTGGGGTCAGTAACCCC
ATCACCATTCGGGCCATGGGGTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTTAACCTGCTGAGCCATAGTGG------------------------------------
------------------------------------------------------------
------------TGAGTGGGTCTATGTTCTAATGGGGGTTATGGAGGTAGTGTTGTGTGC
GTGTGCAATGCGTGTGAGAGAATGAATTCTCCTCTTGTGGAAGTGCTCACACCCCACAGT
CCCTTGCTGTGTTCCTTCACCCTGCATAACTCAGTCTTGTCATTTGTGAAATGGAGCTCC
CTGAGGAGGGATTGAGATCACATGTATCTGGCAGTCAACAATGATGTGGCACATTCCAAG
GGTCCAACAAAGGGCATCTATCATTTCCCGGGAGCCCCCTTTTCTCCACCAGGGGTGTCA
GGATGATTCCCTCATTGGGTTCCCACTCTCTGACCCCCACCCTCCCCGCAGACCCTCTTC
CAGAGCCCAGAGGAAGGCTGGCAGCTGTACACCTCGGCCCAGGCTCCTGATGGAAAATGC
ATCTGCACAGCTGTGATCCCTGCACAGAGCACTTGCTCTCGAGATGGCCGGAGCCGGGAG
CTGCGGCAGCTGATGGAGAAGGTTCAGAACGTGTCCCAGTCCATGGAGGTCCTTGAGTTG
CGGACCTACCGTGACCTCCAGTACGTACGCAGCATGGAGACCCTCATGCGGAGCCTGGAT
GCGCGGCTCCGGGCAGCCGATGGGTCCCTCTCGGCCAAGAGCTTCCAGGAGCTGAAGGAC
AGGATGACCGAGCTGTTGCCGCTGAGCTCAGTCCTGGAGCAGTACAAGGCCGACACGCGG
ACCATCGTCCGCCTGCGGGAGGAGGTGAGGAATCTCTCTGGCAGCCTAGCAGCCATCCAG
GAGGAGATGGGCGCCTACGGGTACGAGGACCTGCAGCAGCGGGTGATGGCCCTGGAGGCT
CGGCTCCATGCCTGCGCCCAGAAGCTGGGTTGCGGGAAGCTGACTGGGGTCAGTAACCCC
ATCACCATTCGGGCCATGGGGTCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61824405|ref|XP_583828.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61824405|ref|XP_583828.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               242-401, - strand, RNAz p=0.993583

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               242-401, - strand, RNAz p=0.993583

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               31-515, gnl|bosTau2|chr7 (10791676-10791187)
               

               
               31-515, gnl|Hg17|chr19 (9832785-9832319)
               


               
               658-882, gnl|bosTau2|chr7 (10787616-10787392)
               

               
               658-882, gnl|canFam2|chr20 (54153602-54153355)
               

               
               658-882, gnl|danRer3|chr2 (6410741-6410980)
               

               
               658-882, gnl|echTel1|scaffold_321404 (76669-76431)
               

               
               658-882, gnl|fr1|chrUn (183206539-183206765)
               

               
               658-882, gnl|galGal2|chr17 (2807471-2807723)
               

               
               658-882, gnl|hg17|chr19 (9828933-9829180)
               

               
               658-882, gnl|Hg17|chr19 (9829161-9828937)
               

               
               658-882, gnl|loxAfr1|scaffold_16675 (31666-31910)
               

               
               658-882, gnl|mm7|chr9 (20542303-20542550)
               

               
               658-882, gnl|Mm7|chr9 (20542531-20542307)
               

               
               658-882, gnl|monDom2|scaffold_106 (1483358-1483601)
               

               
               658-882, gnl|oryCun1|scaffold_132472 (1863-2109)
               

               
               658-882, gnl|panTro1|chr20 (10192258-10192505)
               

               
               658-882, gnl|rheMac2|chr19 (9654915-9655162)
               

               
               658-882, gnl|rn3|chr8 (19689960-19690207)
               

               
               658-882, gnl|tetNig1|chr18 (8726056-8726282)
               

               
               658-882, gnl|xenTro1|scaffold_774 (234454-234216)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               31-515, gnl|bosTau2|chr7 (10791676-10791187)
               

               
               31-515, gnl|Hg17|chr19 (9832785-9832319)
               


               
               658-882, gnl|bosTau2|chr7 (10787616-10787392)
               

               
               658-882, gnl|canFam2|chr20 (54153602-54153355)
               

               
               658-882, gnl|danRer3|chr2 (6410741-6410980)
               

               
               658-882, gnl|echTel1|scaffold_321404 (76669-76431)
               

               
               658-882, gnl|fr1|chrUn (183206539-183206765)
               

               
               658-882, gnl|galGal2|chr17 (2807471-2807723)
               

               
               658-882, gnl|hg17|chr19 (9828933-9829180)
               

               
               658-882, gnl|Hg17|chr19 (9829161-9828937)
               

               
               658-882, gnl|loxAfr1|scaffold_16675 (31666-31910)
               

               
               658-882, gnl|mm7|chr9 (20542303-20542550)
               

               
               658-882, gnl|Mm7|chr9 (20542531-20542307)
               

               
               658-882, gnl|monDom2|scaffold_106 (1483358-1483601)
               

               
               658-882, gnl|oryCun1|scaffold_132472 (1863-2109)
               

               
               658-882, gnl|panTro1|chr20 (10192258-10192505)
               

               
               658-882, gnl|rheMac2|chr19 (9654915-9655162)
               

               
               658-882, gnl|rn3|chr8 (19689960-19690207)
               

               
               658-882, gnl|tetNig1|chr18 (8726056-8726282)
               

               
               658-882, gnl|xenTro1|scaffold_774 (234454-234216)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)
               

               
               ecc (0.115035)

	31-515, gnl\|bosTau2\|chr7 (10791676-10791187)
	31-515, gnl\|Hg17\|chr19 (9832785-9832319)

	658-882, gnl\|bosTau2\|chr7 (10787616-10787392)
	658-882, gnl\|canFam2\|chr20 (54153602-54153355)
	658-882, gnl\|danRer3\|chr2 (6410741-6410980)
	658-882, gnl\|echTel1\|scaffold_321404 (76669-76431)
	658-882, gnl\|fr1\|chrUn (183206539-183206765)
	658-882, gnl\|galGal2\|chr17 (2807471-2807723)
	658-882, gnl\|hg17\|chr19 (9828933-9829180)
	658-882, gnl\|Hg17\|chr19 (9829161-9828937)
	658-882, gnl\|loxAfr1\|scaffold_16675 (31666-31910)
	658-882, gnl\|mm7\|chr9 (20542303-20542550)
	658-882, gnl\|Mm7\|chr9 (20542531-20542307)
	658-882, gnl\|monDom2\|scaffold_106 (1483358-1483601)
	658-882, gnl\|oryCun1\|scaffold_132472 (1863-2109)
	658-882, gnl\|panTro1\|chr20 (10192258-10192505)
	658-882, gnl\|rheMac2\|chr19 (9654915-9655162)
	658-882, gnl\|rn3\|chr8 (19689960-19690207)
	658-882, gnl\|tetNig1\|chr18 (8726056-8726282)
	658-882, gnl\|xenTro1\|scaffold_774 (234454-234216)