Non-Coding RNA Search

Ss1.1-Pig2-128K14.5

Sequence:


               
               CCCCACCGGGGCACCGGCCTCCTCATCCGGCTCCCCCACCACCGCTGCTGCTGCCACGGT
CCCACAGTGACCCGGGCATCACCACCTCCAGCAACACCGCTGAATTCAGGGACCTTTATA
CCAAAGTGCTTGAGGAAGAAGCTGCTTCCATTTCCTCTGCAGATACAGGGCTCTGCTCTG
AAGCCTGCCTCTTCCGTCTAGCCCACTGCCCTTCCCCCAAGTTGCTCCGTGCCCGCTCAG
CCGAGAAACGGCGCCCTGTGCCCACCTTCCAGAAGGTCCCCCTGCCCTCGGGCCCTGCAC
CTGCCCACTCCCTAGGGGACCTGAAGGGCAGCTGGCCAGGCCGGGGCTTGGTCGCTCGTT
TCCTCCAGATGTCCAGGAAGGCCCCGGACCCCAATGGGAATGGAACCCATGGGCATAAGC
AGGTGCCCCGGAGCCCGTGGGGCCGGCCAGGCCGAGAGAGCCTCCACCTTCGCAGCTGCG
GTGACCTGAGCTCCGGCTCCTCCCTGAGGCGCCTCCTGTCTGGCCGCAGGCTGGAGCGTG
GTACCCGCCCCCAAAGCCTCAGCCTCAATGGGGGCAGCCGGGAGACTGGGCTCTGACCTG
GGCATCCTTACACACTGACCAGATCCAGATGAATGCTGGGGCCACAGGCACCAGCTGGTT
GGGACCAGCAGCCCTCAGCACCCCCTTGCACTGGCTGACACAAAAAGAAACTTGCTGAGC
ACCCCAAAAGTATCTTCCCCTCTTACCTCTAGGGGCTCCTGCAGCTTGCCTCTGCCCCTC
TGGTCTGGGTGAGCTTCTGCCCTGTGCTGCGTGGGTATTCAGGCTGTGGAGGGAGACGTC
CCTGCTTACAGCATTGGAGGAGGACAGTAAAGTCTTGCTCCCCCAGCATGAGAGTAACCG
ATGTGCCAGGGGCCCTGTGGCCGGGGCAAAGGCATATCCCGGGTGTTTAAGCATACGGGG
CTGTGTGCCTGTGCAATGGGGCGGTGAGGCATGATGGGTCAAAAAATTCTGGCCTCTCAG
CTCTGCCACCTCCAGCTGCATGATCTTGGGCAAGCTATTTAACCTCAGTTGCCTGATCCA
TAAAACATTATGAGGATGAATGTTTGTAAAGCTCTTAACACACTACATAAGCCTTCAATA
AATTTCAATTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCACCGGGGCACCGGCCTCCTCATCCGGCTCCCCCACCACCGCTGCTGCTGCCACGGT
CCCACAGTGACCCGGGCATCACCACCTCCAGCAACACCGCTGAATTCAGGGACCTTTATA
CCAAAGTGCTTGAGGAAGAAGCTGCTTCCATTTCCTCTGCAGATACAGGGCTCTGCTCTG
AAGCCTGCCTCTTCCGTCTAGCCCACTGCCCTTCCCCCAAGTTGCTCCGTGCCCGCTCAG
CCGAGAAACGGCGCCCTGTGCCCACCTTCCAGAAGGTCCCCCTGCCCTCGGGCCCTGCAC
CTGCCCACTCCCTAGGGGACCTGAAGGGCAGCTGGCCAGGCCGGGGCTTGGTCGCTCGTT
TCCTCCAGATGTCCAGGAAGGCCCCGGACCCCAATGGGAATGGAACCCATGGGCATAAGC
AGGTGCCCCGGAGCCCGTGGGGCCGGCCAGGCCGAGAGAGCCTCCACCTTCGCAGCTGCG
GTGACCTGAGCTCCGGCTCCTCCCTGAGGCGCCTCCTGTCTGGCCGCAGGCTGGAGCGTG
GTACCCGCCCCCAAAGCCTCAGCCTCAATGGGGGCAGCCGGGAGACTGGGCTCTGACCTG
GGCATCCTTACACACTGACCAGATCCAGATGAATGCTGGGGCCACAGGCACCAGCTGGTT
GGGACCAGCAGCCCTCAGCACCCCCTTGCACTGGCTGACACAAAAAGAAACTTGCTGAGC
ACCCCAAAAGTATCTTCCCCTCTTACCTCTAGGGGCTCCTGCAGCTTGCCTCTGCCCCTC
TGGTCTGGGTGAGCTTCTGCCCTGTGCTGCGTGGGTATTCAGGCTGTGGAGGGAGACGTC
CCTGCTTACAGCATTGGAGGAGGACAGTAAAGTCTTGCTCCCCCAGCATGAGAGTAACCG
ATGTGCCAGGGGCCCTGTGGCCGGGGCAAAGGCATATCCCGGGTGTTTAAGCATACGGGG
CTGTGTGCCTGTGCAATGGGGCGGTGAGGCATGATGGGTCAAAAAATTCTGGCCTCTCAG
CTCTGCCACCTCCAGCTGCATGATCTTGGGCAAGCTATTTAACCTCAGTTGCCTGATCCA
TAAAACATTATGAGGATGAATGTTTGTAAAGCTCTTAACACACTACATAAGCCTTCAATA
AATTTCAATTTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8BMZ6_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8BMZ6_MOUSE

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               1-103, - strand, RNAz p=0.805269
               

               
               245-424, - strand, RNAz p=0.96958
               

               
               936-1087, - strand, RNAz p=0.962991

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-103, - strand, RNAz p=0.805269
               

               
               245-424, - strand, RNAz p=0.96958
               

               
               936-1087, - strand, RNAz p=0.962991

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-103, gnl|bosTau2|chr3 (10319099-10319201)
               

               
               1-103, gnl|Hg17|chr1 (152033238-152033136)
               

               
               1-103, gnl|Mm7|chr3 (89313916-89314018)
               


               
               166-424, gnl|bosTau2|chr3 (10319962-10320220)
               

               
               166-424, gnl|Hg17|chr1 (152031170-152030912)
               

               
               166-424, gnl|Mm7|chr3 (89314630-89314888)
               


               
               656-1151, gnl|bosTau2|chr3 (10320522-10321018)
               

               
               656-1151, gnl|Hg17|chr1 (152030608-152030089)
               

               
               656-1151, gnl|Mm7|chr3 (89315183-89315691)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-103, gnl|bosTau2|chr3 (10319099-10319201)
               

               
               1-103, gnl|Hg17|chr1 (152033238-152033136)
               

               
               1-103, gnl|Mm7|chr3 (89313916-89314018)
               


               
               166-424, gnl|bosTau2|chr3 (10319962-10320220)
               

               
               166-424, gnl|Hg17|chr1 (152031170-152030912)
               

               
               166-424, gnl|Mm7|chr3 (89314630-89314888)
               


               
               656-1151, gnl|bosTau2|chr3 (10320522-10321018)
               

               
               656-1151, gnl|Hg17|chr1 (152030608-152030089)
               

               
               656-1151, gnl|Mm7|chr3 (89315183-89315691)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               pla (0.267344)
               

               
               ese (0.126502)
               

               
               med (0.116252)
               

               
               jca (0.11396)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)
               

               
               ese (0.126502)
               

               
               med (0.116252)
               

               
               jca (0.11396)

	1-103, - strand, RNAz p=0.805269
	245-424, - strand, RNAz p=0.96958
	936-1087, - strand, RNAz p=0.962991

	1-103, gnl\|bosTau2\|chr3 (10319099-10319201)
	1-103, gnl\|Hg17\|chr1 (152033238-152033136)
	1-103, gnl\|Mm7\|chr3 (89313916-89314018)

	166-424, gnl\|bosTau2\|chr3 (10319962-10320220)
	166-424, gnl\|Hg17\|chr1 (152031170-152030912)
	166-424, gnl\|Mm7\|chr3 (89314630-89314888)

	656-1151, gnl\|bosTau2\|chr3 (10320522-10321018)
	656-1151, gnl\|Hg17\|chr1 (152030608-152030089)
	656-1151, gnl\|Mm7\|chr3 (89315183-89315691)