Non-Coding RNA Search

Ss1.1-Pig2-128M21.5

Sequence:


               
               TGCATTACTGAAGCCCTTATCACTAAGCGGAACTTGACCTTCCCTGAGGATGAGGATCTG
TCAGAAAAGATGTTCCACACACTTGCTGAACTGCAGACTGTCCGCCTGGACCGAGAGGGA
ATTACCACCATCAGGAACCTAGAGGGCCTCCAGAATCTTCACAGCCTCTATCTGCAAGGG
AATAAGATCCAGCGAATTGAGAACCTGGCCTGCGTCCCCTCCTTGCGCTTCCTGTCTCTG
GCAGGAAACCGAATCAGGCAGGTGGAAAACCTGCGAGACCTCCCATACCTCCAGTTCCTG
GACCTTTCTGAGAACCTGATAGAAATACTGAAGCTAGATGAATTCCCCGAGAGCCTTCTC
ATCCTCAATCTGACTGGAAACAGCTGCACCAACCAGGAGGGCTACCGGAAGCTGGTGACA
GAAGCCCTGCCACTGCTCCTGGACCTGGATGGGCAGCCTGTGTCAGAGCGCTGGACCTCG
GACGAGGAGGATGAAGCCTCGAGCGATGAGGACAAGGAGTTCCCGGAGCTGAAAGGCCCA
TTCTGTTCAGAGCGAGGCTTCCTCAAGGAGCTGGACCAGGAGATGAGCAGGCACCAGGAG
CGCAGGCAGCAGGCAGCCCTGCTGGAGCACCTGCTGAGGGTGGAGACGAAGCCCGCCCTT
ACCGCCCTCCCCCTGCTGCCAGGGGCGCCCATGGCTGGGGACAGCAGCCCTTCCGTCCCT
CCCAGTCAAGGGAAGGTGACATCCCCTGAGCCCGCCTCCTCGCCACAAGCCTCCTCCCCC
ACCAAGAAACCATGCCCTCTGGCCTTCAGGAGCCAGCAAAGCACTGGGAAGGGGGCCACA
GGGGCCATAGCATCCACAACCTCCAAGGCCTTTCTGCCTGGTGCCCCCCGCACCACCAAA
GCTGTGACCAAAAGAATCAAGAAGTGAAGCTGGGCCCTTCACCATCAGCAAAGTCCCAGA
ACAAGGAGGAACGAGGGGTGGGTGGGCCTCCTCTCCTCCTCAGAAGCCTCACCTGTGGCA
GGAGTCCTATCCCCAATAAAGTACCTCCAGGCCCTGAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCATTACTGAAGCCCTTATCACTAAGCGGAACTTGACCTTCCCTGAGGATGAGGATCTG
TCAGAAAAGATGTTCCACACACTTGCTGAACTGCAGACTGTCCGCCTGGACCGAGAGGGA
ATTACCACCATCAGGAACCTAGAGGGCCTCCAGAATCTTCACAGCCTCTATCTGCAAGGG
AATAAGATCCAGCGAATTGAGAACCTGGCCTGCGTCCCCTCCTTGCGCTTCCTGTCTCTG
GCAGGAAACCGAATCAGGCAGGTGGAAAACCTGCGAGACCTCCCATACCTCCAGTTCCTG
GACCTTTCTGAGAACCTGATAGAAATACTGAAGCTAGATGAATTCCCCGAGAGCCTTCTC
ATCCTCAATCTGACTGGAAACAGCTGCACCAACCAGGAGGGCTACCGGAAGCTGGTGACA
GAAGCCCTGCCACTGCTCCTGGACCTGGATGGGCAGCCTGTGTCAGAGCGCTGGACCTCG
GACGAGGAGGATGAAGCCTCGAGCGATGAGGACAAGGAGTTCCCGGAGCTGAAAGGCCCA
TTCTGTTCAGAGCGAGGCTTCCTCAAGGAGCTGGACCAGGAGATGAGCAGGCACCAGGAG
CGCAGGCAGCAGGCAGCCCTGCTGGAGCACCTGCTGAGGGTGGAGACGAAGCCCGCCCTT
ACCGCCCTCCCCCTGCTGCCAGGGGCGCCCATGGCTGGGGACAGCAGCCCTTCCGTCCCT
CCCAGTCAAGGGAAGGTGACATCCCCTGAGCCCGCCTCCTCGCCACAAGCCTCCTCCCCC
ACCAAGAAACCATGCCCTCTGGCCTTCAGGAGCCAGCAAAGCACTGGGAAGGGGGCCACA
GGGGCCATAGCATCCACAACCTCCAAGGCCTTTCTGCCTGGTGCCCCCCGCACCACCAAA
GCTGTGACCAAAAGAATCAAGAAGTGAAGCTGGGCCCTTCACCATCAGCAAAGTCCCAGA
ACAAGGAGGAACGAGGGGTGGGTGGGCCTCCTCTCCTCCTCAGAAGCCTCACCTGTGGCA
GGAGTCCTATCCCCAATAAAGTACCTCCAGGCCCTGAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61867606|ref|XP_592951.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61867606|ref|XP_592951.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               714-953, - strand, RNAz p=0.993791
               

               
               729-940, - strand, RNAz p=0.987974

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               714-953, - strand, RNAz p=0.993791
               

               
               729-940, - strand, RNAz p=0.987974

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

Help | Less info


               
               72-193, gnl|bosTau2|chr19 (30688495-30688375)
               

               
               72-193, gnl|Hg17|chr17 (43266790-43266909)
               

               
               72-193, gnl|Mm7|chr11 (97147919-97147795)
               


               
               227-335, gnl|bosTau2|chr19 (30687235-30687127)
               

               
               227-335, gnl|Hg17|chr17 (43268030-43268138)
               

               
               227-335, gnl|Mm7|chr11 (97145245-97145137)
               


               
               555-1056, gnl|bosTau2|chr19 (30686353-30685856)
               

               
               555-1056, gnl|canFam2|chr9 (27494905-27495535)
               

               
               555-1056, gnl|echTel1|scaffold_144177 (79-699)
               

               
               555-1056, gnl|hg17|chr17 (43269033-43269643)
               

               
               555-1056, gnl|Hg17|chr17 (43269113-43269594)
               

               
               555-1056, gnl|mm7|chr11 (97144125-97143528)
               

               
               555-1056, gnl|Mm7|chr11 (97144065-97143637)
               

               
               555-1056, gnl|monDom2|scaffold_18 (46664986-46664362)
               

               
               555-1056, gnl|panTro1|chr19_random (42221219-42221829)
               

               
               555-1056, gnl|rn3|chr10 (85772090-85771558)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               72-193, gnl|bosTau2|chr19 (30688495-30688375)
               

               
               72-193, gnl|Hg17|chr17 (43266790-43266909)
               

               
               72-193, gnl|Mm7|chr11 (97147919-97147795)
               


               
               227-335, gnl|bosTau2|chr19 (30687235-30687127)
               

               
               227-335, gnl|Hg17|chr17 (43268030-43268138)
               

               
               227-335, gnl|Mm7|chr11 (97145245-97145137)
               


               
               555-1056, gnl|bosTau2|chr19 (30686353-30685856)
               

               
               555-1056, gnl|canFam2|chr9 (27494905-27495535)
               

               
               555-1056, gnl|echTel1|scaffold_144177 (79-699)
               

               
               555-1056, gnl|hg17|chr17 (43269033-43269643)
               

               
               555-1056, gnl|Hg17|chr17 (43269113-43269594)
               

               
               555-1056, gnl|mm7|chr11 (97144125-97143528)
               

               
               555-1056, gnl|Mm7|chr11 (97144065-97143637)
               

               
               555-1056, gnl|monDom2|scaffold_18 (46664986-46664362)
               

               
               555-1056, gnl|panTro1|chr19_random (42221219-42221829)
               

               
               555-1056, gnl|rn3|chr10 (85772090-85771558)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               nlu (0.191681)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)

	714-953, - strand, RNAz p=0.993791
	729-940, - strand, RNAz p=0.987974

	72-193, gnl\|bosTau2\|chr19 (30688495-30688375)
	72-193, gnl\|Hg17\|chr17 (43266790-43266909)
	72-193, gnl\|Mm7\|chr11 (97147919-97147795)

	227-335, gnl\|bosTau2\|chr19 (30687235-30687127)
	227-335, gnl\|Hg17\|chr17 (43268030-43268138)
	227-335, gnl\|Mm7\|chr11 (97145245-97145137)

	555-1056, gnl\|bosTau2\|chr19 (30686353-30685856)
	555-1056, gnl\|canFam2\|chr9 (27494905-27495535)
	555-1056, gnl\|echTel1\|scaffold_144177 (79-699)
	555-1056, gnl\|hg17\|chr17 (43269033-43269643)
	555-1056, gnl\|Hg17\|chr17 (43269113-43269594)
	555-1056, gnl\|mm7\|chr11 (97144125-97143528)
	555-1056, gnl\|Mm7\|chr11 (97144065-97143637)
	555-1056, gnl\|monDom2\|scaffold_18 (46664986-46664362)
	555-1056, gnl\|panTro1\|chr19_random (42221219-42221829)
	555-1056, gnl\|rn3\|chr10 (85772090-85771558)