Non-Coding RNA Search

Ss1.1-Pig2-129D03.5

Sequence:


               
               AGAGCATCGAGCCAAAGGGGAGATGAGTTTGTCTGTCCTCGGTTGAGGCTCCGGCCGGGC
CTAGGGAACTGGGAGCCCGGGTTGGAGCGACACCCGTGGAAGTGGGAGGAGGTGGCTCTG
GGACTTTAACCCCTTGTGGGCTCTGCGGCAGGGGATTTAACCCTTTGTGGATCCAGCCCC
TCGGAGTCAGCGTCATCGGGTAGTTTTAACCCTTTCGGGGCTGGGTTTAACCCGTTGGAT
TTAACATCTCGTTGCCCACCAACTCCTCGATAGCGGGGCGCTCTGCGGGGAGGCTTGAGG
CCCACCCCCTCTGCACATTACGTACTGTTTTGCTGCTGCACCCCCTTGGACCCGCTAGCT
GGCCGCGCTGTGAGCGCTTAACCCTTTACTGACTTGAACTCCCCAAGTTGCAGTTGGAGT
TTGCTGACAGAAGGACTGGCTAAAGGCATCACTGCAGGAATTACAGACCGAAGAGGACTG
TGTTGGACATTTTTGAAAAGAAAAGAAAAACCTTTTTTTTCTTTAAGGACTTAACAGCCA
AAATTCTTCAAACTTCGAGAAGAGGATTCTATTAGCCATGGATGAGCCACTCTTGTCAGA
GTATCAGCACCAGCCTCAAACTAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGCATCGAGCCAAAGGGGAGATGAGTTTGTCTGTCCTCGGTTGAGGCTCCGGCCGGGC
CTAGGGAACTGGGAGCCCGGGTTGGAGCGACACCCGTGGAAGTGGGAGGAGGTGGCTCTG
GGACTTTAACCCCTTGTGGGCTCTGCGGCAGGGGATTTAACCCTTTGTGGATCCAGCCCC
TCGGAGTCAGCGTCATCGGGTAGTTTTAACCCTTTCGGGGCTGGGTTTAACCCGTTGGAT
TTAACATCTCGTTGCCCACCAACTCCTCGATAGCGGGGCGCTCTGCGGGGAGGCTTGAGG
CCCACCCCCTCTGCACATTACGTACTGTTTTGCTGCTGCACCCCCTTGGACCCGCTAGCT
GGCCGCGCTGTGAGCGCTTAACCCTTTACTGACTTGAACTCCCCAAGTTGCAGTTGGAGT
TTGCTGACAGAAGGACTGGCTAAAGGCATCACTGCAGGAATTACAGACCGAAGAGGACTG
TGTTGGACATTTTTGAAAAGAAAAGAAAAACCTTTTTTTTCTTTAAGGACTTAACAGCCA
AAATTCTTCAAACTTCGAGAAGAGGATTCTATTAGCCATGGATGAGCCACTCTTGTCAGA
GTATCAGCACCAGCCTCAAACTAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-260, - strand, RNAz p=0.843522

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-260, - strand, RNAz p=0.843522

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               1-260, gnl|bosTau2|chr19 (37200923-37200662)
               

               
               1-260, gnl|canFam2|chr9 (21704243-21703628)
               

               
               1-260, gnl|dasNov1|scaffold_23226 (15513-14890)
               

               
               1-260, gnl|hg17|chr17 (40581405-40582019)
               

               
               1-260, gnl|Hg17|chr17 (40581759-40582018)
               

               
               1-260, gnl|loxAfr1|scaffold_14460 (1349-734)
               

               
               1-260, gnl|mm7|chr11 (103225052-103225663)
               

               
               1-260, gnl|Mm7|chr11 (103225400-103225662)
               

               
               1-260, gnl|monDom2|scaffold_18 (41298177-41297530)
               

               
               1-260, gnl|oryCun1|scaffold_205221 (93198-93813)
               

               
               1-260, gnl|panTro1|chr19 (43861807-43862418)
               

               
               1-260, gnl|rheMac2|chr16 (55245027-55245641)
               

               
               1-260, gnl|rn3|chr10 (92304411-92305017)
               


               
               374-624, gnl|bosTau2|chr19 (37200611-37200363)
               

               
               374-624, gnl|Hg17|chr17 (40582128-40582387)
               

               
               374-624, gnl|Mm7|chr11 (103225777-103226009)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-260, gnl|bosTau2|chr19 (37200923-37200662)
               

               
               1-260, gnl|canFam2|chr9 (21704243-21703628)
               

               
               1-260, gnl|dasNov1|scaffold_23226 (15513-14890)
               

               
               1-260, gnl|hg17|chr17 (40581405-40582019)
               

               
               1-260, gnl|Hg17|chr17 (40581759-40582018)
               

               
               1-260, gnl|loxAfr1|scaffold_14460 (1349-734)
               

               
               1-260, gnl|mm7|chr11 (103225052-103225663)
               

               
               1-260, gnl|Mm7|chr11 (103225400-103225662)
               

               
               1-260, gnl|monDom2|scaffold_18 (41298177-41297530)
               

               
               1-260, gnl|oryCun1|scaffold_205221 (93198-93813)
               

               
               1-260, gnl|panTro1|chr19 (43861807-43862418)
               

               
               1-260, gnl|rheMac2|chr16 (55245027-55245641)
               

               
               1-260, gnl|rn3|chr10 (92304411-92305017)
               


               
               374-624, gnl|bosTau2|chr19 (37200611-37200363)
               

               
               374-624, gnl|Hg17|chr17 (40582128-40582387)
               

               
               374-624, gnl|Mm7|chr11 (103225777-103226009)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               ute (0.132784)
               

               
               eep (0.122564)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ute (0.132784)
               

               
               eep (0.122564)

	1-260, gnl\|bosTau2\|chr19 (37200923-37200662)
	1-260, gnl\|canFam2\|chr9 (21704243-21703628)
	1-260, gnl\|dasNov1\|scaffold_23226 (15513-14890)
	1-260, gnl\|hg17\|chr17 (40581405-40582019)
	1-260, gnl\|Hg17\|chr17 (40581759-40582018)
	1-260, gnl\|loxAfr1\|scaffold_14460 (1349-734)
	1-260, gnl\|mm7\|chr11 (103225052-103225663)
	1-260, gnl\|Mm7\|chr11 (103225400-103225662)
	1-260, gnl\|monDom2\|scaffold_18 (41298177-41297530)
	1-260, gnl\|oryCun1\|scaffold_205221 (93198-93813)
	1-260, gnl\|panTro1\|chr19 (43861807-43862418)
	1-260, gnl\|rheMac2\|chr16 (55245027-55245641)
	1-260, gnl\|rn3\|chr10 (92304411-92305017)

	374-624, gnl\|bosTau2\|chr19 (37200611-37200363)
	374-624, gnl\|Hg17\|chr17 (40582128-40582387)
	374-624, gnl\|Mm7\|chr11 (103225777-103226009)