Non-Coding RNA Search

Ss1.1-Pig2-129K19.5

Sequence:


               
               GGTCCCCAGAAACTCTATCATGGGACTCTTGTACAACTGGAAAGCTTGTTCTCTGGTCAC
ACGATGCATTCTAGGCTACTTCCTGACTTACTGGCTCCTGGGACTACTCCTACATTGCAA
CTTCCTGCCTTGGACATGACCTGGAGACTGAGGGGACAGGCTTGAAGCAGACTTAACTAG
GATCTGAAAGTACACATACACTCTGGGGCTGCCTGTGCTGCCCTGGAATTTTTATCCATT
AGACCCTCTCTCTCTCTTTGAAGGTTGGTTGGGAACGGGAGAAGTGCGAGCCTCTAGAGA
GCCCCTTCTGGGCCTGGCCATGGCAGATTTTAGAGTAGAAACTGTTTTCTCTGTAAATGA
AGAAATCCTACTGCAAGTCTAAAGTACACCTAGATCTATCTTGTCTATCAACCATGGCAG
AGATCCTCTTAAACTTACCACCCACCCACATATCAATTTAAATGTAAATTTCATCAAAGG
CTCTAACTGCTAAGTTGGGAATAGTTCACATGTGATGGTGGAGGGCAGCTGAGGGGCAGT
ACTAAGTAAAGTGGGACCATCTTTTCTAAATGGGACATTGTTTCTTTTTTTCTTTTCTCA
GGCACATCTTCCGCCTATGGAAGTTCCCAGGCTAGGGGTCAAATTGGAGCTGCAGCTGAG
GCCTACACCACAGCCATGGCAACACCAGATCAGAGCCACATCTATGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTCCCCAGAAACTCTATCATGGGACTCTTGTACAACTGGAAAGCTTGTTCTCTGGTCAC
ACGATGCATTCTAGGCTACTTCCTGACTTACTGGCTCCTGGGACTACTCCTACATTGCAA
CTTCCTGCCTTGGACATGACCTGGAGACTGAGGGGACAGGCTTGAAGCAGACTTAACTAG
GATCTGAAAGTACACATACACTCTGGGGCTGCCTGTGCTGCCCTGGAATTTTTATCCATT
AGACCCTCTCTCTCTCTTTGAAGGTTGGTTGGGAACGGGAGAAGTGCGAGCCTCTAGAGA
GCCCCTTCTGGGCCTGGCCATGGCAGATTTTAGAGTAGAAACTGTTTTCTCTGTAAATGA
AGAAATCCTACTGCAAGTCTAAAGTACACCTAGATCTATCTTGTCTATCAACCATGGCAG
AGATCCTCTTAAACTTACCACCCACCCACATATCAATTTAAATGTAAATTTCATCAAAGG
CTCTAACTGCTAAGTTGGGAATAGTTCACATGTGATGGTGGAGGGCAGCTGAGGGGCAGT
ACTAAGTAAAGTGGGACCATCTTTTCTAAATGGGACATTGTTTCTTTTTTTCTTTTCTCA
GGCACATCTTCCGCCTATGGAAGTTCCCAGGCTAGGGGTCAAATTGGAGCTGCAGCTGAG
GCCTACACCACAGCCATGGCAACACCAGATCAGAGCCACATCTATGAC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               426-527, + strand, RNAz p=0.59378

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               426-527, + strand, RNAz p=0.59378

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of NM_017837, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_017837, +

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               1-381, gnl|bosTau2|chr2 (78634596-78634980)
               

               
               1-381, gnl|Hg17|chr1 (26808339-26808742)
               

               
               1-381, gnl|Mm7|chr4 (133041081-133040736)
               


               
               426-585, gnl|bosTau2|chr2 (78635297-78635462)
               

               
               426-585, gnl|Hg17|chr1 (26808774-26808945)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-381, gnl|bosTau2|chr2 (78634596-78634980)
               

               
               1-381, gnl|Hg17|chr1 (26808339-26808742)
               

               
               1-381, gnl|Mm7|chr4 (133041081-133040736)
               


               
               426-585, gnl|bosTau2|chr2 (78635297-78635462)
               

               
               426-585, gnl|Hg17|chr1 (26808774-26808945)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               elu (0.385356)
               

               
               pan (0.23596)
               

               
               thg (0.126791)
               

               
               bla (0.124347)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               pan (0.23596)
               

               
               thg (0.126791)
               

               
               bla (0.124347)

	1-381, gnl\|bosTau2\|chr2 (78634596-78634980)
	1-381, gnl\|Hg17\|chr1 (26808339-26808742)
	1-381, gnl\|Mm7\|chr4 (133041081-133040736)

	426-585, gnl\|bosTau2\|chr2 (78635297-78635462)
	426-585, gnl\|Hg17\|chr1 (26808774-26808945)