Non-Coding RNA Search

Ss1.1-Pig2-129N12.5

Sequence:


               
               TGTCGATCGAGAGTATGAGACTAGCTCAACTGGAGAAGACAGCGCTCCTGAATGTCAGAG
AAACCGTCTTCACAATCCTAATATCCACAGTAATATCAATGGCAATATATACATTGCACA
GAATGGTTCTGTGGTAAGAACCCGCCGTGCCTGCCTCACCGATAACTTAAAAGTTACTTC
CCCTGTTCGACTGGGGAAGCACTTTAAGAAAATAGACAAGTTGGCAGTGACACATGAGGA
GAATGTTCCCCTGAACACATTATCGAAGGGGCCGTTTTCTACTGAAAAAATGAATTCAAG
ACCAACTCTGGTTACATTTGCCCCTTGCCATGTGGGGACTGACAGTACCGCAGTGAAGCC
ATTGGGGAACAGGCTGAAAAGCACAGTGCAACAGGAGTCTGTGGTTGACAGTAAGAACAT
CAAGGAGGCTTTGGAATTCCATAGTGACCATACGCAGTCAGATGATGAGGAGCTTTGGAT
GGGTCCCTGGAACAACCTCCATATACCAATGACAAAACTGTGAGGGAATTTTTTAAAAAG
TTATTTTAATTTTTACTTCAGTTTTTAATAAACTGCACTTTTTATTGTCACTGACAAAAC
AACGTATGGGATTTATATCATGCACACAAGCTATAACTTTGAAAAATAGGCTTTAAAAAA
AGACAGATTTGCACTTACATTTGTATCAATTAATTGTTTGTCCCAGAAAAATCTTTTTGG
ACAGACTCTCAATTCACTATATAACATTTAAACATTTAGCTGTTTTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTCGATCGAGAGTATGAGACTAGCTCAACTGGAGAAGACAGCGCTCCTGAATGTCAGAG
AAACCGTCTTCACAATCCTAATATCCACAGTAATATCAATGGCAATATATACATTGCACA
GAATGGTTCTGTGGTAAGAACCCGCCGTGCCTGCCTCACCGATAACTTAAAAGTTACTTC
CCCTGTTCGACTGGGGAAGCACTTTAAGAAAATAGACAAGTTGGCAGTGACACATGAGGA
GAATGTTCCCCTGAACACATTATCGAAGGGGCCGTTTTCTACTGAAAAAATGAATTCAAG
ACCAACTCTGGTTACATTTGCCCCTTGCCATGTGGGGACTGACAGTACCGCAGTGAAGCC
ATTGGGGAACAGGCTGAAAAGCACAGTGCAACAGGAGTCTGTGGTTGACAGTAAGAACAT
CAAGGAGGCTTTGGAATTCCATAGTGACCATACGCAGTCAGATGATGAGGAGCTTTGGAT
GGGTCCCTGGAACAACCTCCATATACCAATGACAAAACTGTGAGGGAATTTTTTAAAAAG
TTATTTTAATTTTTACTTCAGTTTTTAATAAACTGCACTTTTTATTGTCACTGACAAAAC
AACGTATGGGATTTATATCATGCACACAAGCTATAACTTTGAAAAATAGGCTTTAAAAAA
AGACAGATTTGCACTTACATTTGTATCAATTAATTGTTTGTCCCAGAAAAATCTTTTTGG
ACAGACTCTCAATTCACTATATAACATTTAAACATTTAGCTGTTTTGT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|41149305|ref|XP_373461.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|41149305|ref|XP_373461.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               200-319, + strand, RNAz p=0.644686

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               200-319, + strand, RNAz p=0.644686

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-768, gnl|bosTau2|chr26 (3876443-3877219)
               

               
               1-768, gnl|Hg17|chr10 (55236867-55236094)
               

               
               1-768, gnl|Mm7|chr10 (74301201-74301961)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-768, gnl|bosTau2|chr26 (3876443-3877219)
               

               
               1-768, gnl|Hg17|chr10 (55236867-55236094)
               

               
               1-768, gnl|Mm7|chr10 (74301201-74301961)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cte (0.29274)
               

               
               cbe (0.239234)
               

               
               fhi (0.169578)
               

               
               spc (0.113366)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               cbe (0.239234)
               

               
               fhi (0.169578)
               

               
               spc (0.113366)

	1-768, gnl\|bosTau2\|chr26 (3876443-3877219)
	1-768, gnl\|Hg17\|chr10 (55236867-55236094)
	1-768, gnl\|Mm7\|chr10 (74301201-74301961)