Non-Coding RNA Search

Ss1.1-Pig2-130B14.5

Sequence:


               
               CCTGCCGCTCGTCACCGACGAGGACAGCTGGTACAGCAAGTGGCATAAGATGGAACAGAA
GTTCCGCATTGTCTACGCGCAGAAGGGCTACCTGGAGGAGCTGGTGCGTCTGCGCGAGTC
GCAGCTGAAAGACCTGGAGGCGGAGAACCGGCGGCTGCAGCTGCAGCTGGAGGAGGCGGC
GGCGCAGAACCAGCGCGAGAAGCGGGAGCTGGAAGGCGTGATCCTGGAGCTGCAGGAGCA
GCTGACAGGTCTGATCCCCGGTGACCACGCTCCCCTGGCCCAGGGTTCCAAGGACCTCAC
TGCACGCCTGGTCAACCAGTGGCCATCACTGGGGACACTCAACGGGGCCGAAGGCACTAA
CAACCCCAAGCTCTACCGGAGACACAGTTTCATGAGCACGGAGCCGCTGTCAGCAGAAGC
CAGTCTGAGCTCAGACTCCCAGCGTCTGGGAGAGGGCAAGCGGGACGAGGAGCCTTGGGG
CCCCATCGGAAGCTCAGAGCCAAATTAGTGGCTCCCTTCAAGCGAATGTCCAGGACTTCA
ACGCATGCATTTTTGTGTTGCCCTCCCCCTGGCTTCTCCTTGGTTTCCCACCCTAGTTTT
CCTGGTGCCTGGACTCCTTGTCTTTTCTTTCTAAAACCTACACTGCACTGGATGACCCTA
GATCCTCTTTGAGACGAGGCAGGCCATGGATGTGGAAGCCCGCCACACTGTGTTTGTGAT
TGTCCGTGTGTCTGTCTCCCCACCAGACTGTGAGCTCCGTGAGGGCAGGGACCGTGTCTC
GTCCGTTCTCTGTATCCCCCGTGCTTGGAACGGAACAAGTGCTCACCGTGTGTTTAATAA
ATGGACAAAGAGAGAGGGTGAACCTCAGGGGGGAGACAGAGACATCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGCCGCTCGTCACCGACGAGGACAGCTGGTACAGCAAGTGGCATAAGATGGAACAGAA
GTTCCGCATTGTCTACGCGCAGAAGGGCTACCTGGAGGAGCTGGTGCGTCTGCGCGAGTC
GCAGCTGAAAGACCTGGAGGCGGAGAACCGGCGGCTGCAGCTGCAGCTGGAGGAGGCGGC
GGCGCAGAACCAGCGCGAGAAGCGGGAGCTGGAAGGCGTGATCCTGGAGCTGCAGGAGCA
GCTGACAGGTCTGATCCCCGGTGACCACGCTCCCCTGGCCCAGGGTTCCAAGGACCTCAC
TGCACGCCTGGTCAACCAGTGGCCATCACTGGGGACACTCAACGGGGCCGAAGGCACTAA
CAACCCCAAGCTCTACCGGAGACACAGTTTCATGAGCACGGAGCCGCTGTCAGCAGAAGC
CAGTCTGAGCTCAGACTCCCAGCGTCTGGGAGAGGGCAAGCGGGACGAGGAGCCTTGGGG
CCCCATCGGAAGCTCAGAGCCAAATTAGTGGCTCCCTTCAAGCGAATGTCCAGGACTTCA
ACGCATGCATTTTTGTGTTGCCCTCCCCCTGGCTTCTCCTTGGTTTCCCACCCTAGTTTT
CCTGGTGCCTGGACTCCTTGTCTTTTCTTTCTAAAACCTACACTGCACTGGATGACCCTA
GATCCTCTTTGAGACGAGGCAGGCCATGGATGTGGAAGCCCGCCACACTGTGTTTGTGAT
TGTCCGTGTGTCTGTCTCCCCACCAGACTGTGAGCTCCGTGAGGGCAGGGACCGTGTCTC
GTCCGTTCTCTGTATCCCCCGTGCTTGGAACGGAACAAGTGCTCACCGTGTGTTTAATAA
ATGGACAAAGAGAGAGGGTGAACCTCAGGGGGGAGACAGAGACATCAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               126-244, - strand, RNAz p=0.912691

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               126-244, - strand, RNAz p=0.912691

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               152-244, + strand, RNAmicro p=0.996801

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               152-244, + strand, RNAmicro p=0.996801

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               76-244, gnl|bosTau2|chr19 (37992748-37992580)
               

               
               76-244, gnl|Hg17|chr17 (39748336-39748504)
               

               
               76-244, gnl|Mm7|chr11 (102508917-102509085)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               76-244, gnl|bosTau2|chr19 (37992748-37992580)
               

               
               76-244, gnl|Hg17|chr17 (39748336-39748504)
               

               
               76-244, gnl|Mm7|chr11 (102508917-102509085)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               fcc (0.593354)
               

               
               hyp (0.571347)
               

               
               ebs (0.354904)
               

               
               fhi (0.339155)
               

               
               fce (0.271592)
               

               
               ecc (0.23007)
               

               
               eye (0.170503)
               

               
               nbm (0.0993246)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.593354)
               

               
               hyp (0.571347)
               

               
               ebs (0.354904)
               

               
               fhi (0.339155)
               

               
               fce (0.271592)
               

               
               ecc (0.23007)
               

               
               eye (0.170503)
               

               
               nbm (0.0993246)

	76-244, gnl\|bosTau2\|chr19 (37992748-37992580)
	76-244, gnl\|Hg17\|chr17 (39748336-39748504)
	76-244, gnl\|Mm7\|chr11 (102508917-102509085)

	fcc (0.593354)
	hyp (0.571347)
	ebs (0.354904)
	fhi (0.339155)
	fce (0.271592)
	ecc (0.23007)
	eye (0.170503)
	nbm (0.0993246)