Non-Coding RNA Search

Ss1.1-Pig2-130C23.5

Sequence:


               
               TGGGTGGTTATGGGCGCTTGGCTGGTGGCAGCCGCTGCATCCCTTAATTTATTTCTCTGC
TGTCTCTGTTCTTGAGAAATTGGGGGAGAGGTCCTGAACAGAGGCTGCCTCTACCCTCAC
CTGAGTTGTACATTTTTTTGTGATGGGTTTTATTTTTTATTTTATTATTTTATTTTTTTT
TTTCTTTTTTTGATTTATGATGACCCGTTCTGGGAGAGCCTTTGTCTGAAAGCACAGCCC
CCCACGCCGTTCCTCTCCCCACTGCTCCCCTTCGTTGGCATTAATCTGGGCACCAGCTAG
TTCCATAGCAGTGACTTCCCTCACCACTCATCTCTTGGCCTTGCCTTTTCTTCCTCACAC
TGTCACCCCTCCCTTTCTCCCTCCCCTGCCCTATGGAACAGCCCGGGTGCTCCGAGGGGC
CGGAAGGGCAAGGCTTGGCTCCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGTGGTTATGGGCGCTTGGCTGGTGGCAGCCGCTGCATCCCTTAATTTATTTCTCTGC
TGTCTCTGTTCTTGAGAAATTGGGGGAGAGGTCCTGAACAGAGGCTGCCTCTACCCTCAC
CTGAGTTGTACATTTTTTTGTGATGGGTTTTATTTTTTATTTTATTATTTTATTTTTTTT
TTTCTTTTTTTGATTTATGATGACCCGTTCTGGGAGAGCCTTTGTCTGAAAGCACAGCCC
CCCACGCCGTTCCTCTCCCCACTGCTCCCCTTCGTTGGCATTAATCTGGGCACCAGCTAG
TTCCATAGCAGTGACTTCCCTCACCACTCATCTCTTGGCCTTGCCTTTTCTTCCTCACAC
TGTCACCCCTCCCTTTCTCCCTCCCCTGCCCTATGGAACAGCCCGGGTGCTCCGAGGGGC
CGGAAGGGCAAGGCTTGGCTCCCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               256-372, - strand, RNAz p=0.866144

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               256-372, - strand, RNAz p=0.866144

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               205-372, gnl|bosTau2|chr29 (30627397-30627563)
               

               
               205-372, gnl|canFam2|chr18 (56128483-56128039)
               

               
               205-372, gnl|canFam2|chr18 (56128330-56128042)
               

               
               205-372, gnl|dasNov1|scaffold_59073 (4351-3914)
               

               
               205-372, gnl|dasNov1|scaffold_59073 (4193-3917)
               

               
               205-372, gnl|echTel1|scaffold_263050 (5715-5390)
               

               
               205-372, gnl|echTel1|scaffold_263050 (5637-5393)
               

               
               205-372, gnl|hg17|chr11 (63434111-63434550)
               

               
               205-372, gnl|Hg17|chr11 (63434218-63434388)
               

               
               205-372, gnl|hg17|chr6 (69738410-69738708)
               

               
               205-372, gnl|loxAfr1|scaffold_28969 (6113-5687)
               

               
               205-372, gnl|loxAfr1|scaffold_28969 (5976-5690)
               

               
               205-372, gnl|mm7|chr1 (25721787-25721530)
               

               
               205-372, gnl|mm7|chr19 (7096185-7095809)
               

               
               205-372, gnl|panTro1|chr5 (70851459-70851758)
               

               
               205-372, gnl|panTro1|chr9 (64474834-64475273)
               

               
               205-372, gnl|rheMac2|chr14 (10536098-10535649)
               

               
               205-372, gnl|rheMac2|chr4 (65349592-65349890)
               

               
               205-372, gnl|rn3|chr1 (210116896-210116518)
               

               
               205-372, gnl|rn3|chr9 (24198137-24197880)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               205-372, gnl|bosTau2|chr29 (30627397-30627563)
               

               
               205-372, gnl|canFam2|chr18 (56128483-56128039)
               

               
               205-372, gnl|canFam2|chr18 (56128330-56128042)
               

               
               205-372, gnl|dasNov1|scaffold_59073 (4351-3914)
               

               
               205-372, gnl|dasNov1|scaffold_59073 (4193-3917)
               

               
               205-372, gnl|echTel1|scaffold_263050 (5715-5390)
               

               
               205-372, gnl|echTel1|scaffold_263050 (5637-5393)
               

               
               205-372, gnl|hg17|chr11 (63434111-63434550)
               

               
               205-372, gnl|Hg17|chr11 (63434218-63434388)
               

               
               205-372, gnl|hg17|chr6 (69738410-69738708)
               

               
               205-372, gnl|loxAfr1|scaffold_28969 (6113-5687)
               

               
               205-372, gnl|loxAfr1|scaffold_28969 (5976-5690)
               

               
               205-372, gnl|mm7|chr1 (25721787-25721530)
               

               
               205-372, gnl|mm7|chr19 (7096185-7095809)
               

               
               205-372, gnl|panTro1|chr5 (70851459-70851758)
               

               
               205-372, gnl|panTro1|chr9 (64474834-64475273)
               

               
               205-372, gnl|rheMac2|chr14 (10536098-10535649)
               

               
               205-372, gnl|rheMac2|chr4 (65349592-65349890)
               

               
               205-372, gnl|rn3|chr1 (210116896-210116518)
               

               
               205-372, gnl|rn3|chr9 (24198137-24197880)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	205-372, gnl\|bosTau2\|chr29 (30627397-30627563)
	205-372, gnl\|canFam2\|chr18 (56128483-56128039)
	205-372, gnl\|canFam2\|chr18 (56128330-56128042)
	205-372, gnl\|dasNov1\|scaffold_59073 (4351-3914)
	205-372, gnl\|dasNov1\|scaffold_59073 (4193-3917)
	205-372, gnl\|echTel1\|scaffold_263050 (5715-5390)
	205-372, gnl\|echTel1\|scaffold_263050 (5637-5393)
	205-372, gnl\|hg17\|chr11 (63434111-63434550)
	205-372, gnl\|Hg17\|chr11 (63434218-63434388)
	205-372, gnl\|hg17\|chr6 (69738410-69738708)
	205-372, gnl\|loxAfr1\|scaffold_28969 (6113-5687)
	205-372, gnl\|loxAfr1\|scaffold_28969 (5976-5690)
	205-372, gnl\|mm7\|chr1 (25721787-25721530)
	205-372, gnl\|mm7\|chr19 (7096185-7095809)
	205-372, gnl\|panTro1\|chr5 (70851459-70851758)
	205-372, gnl\|panTro1\|chr9 (64474834-64475273)
	205-372, gnl\|rheMac2\|chr14 (10536098-10535649)
	205-372, gnl\|rheMac2\|chr4 (65349592-65349890)
	205-372, gnl\|rn3\|chr1 (210116896-210116518)
	205-372, gnl\|rn3\|chr9 (24198137-24197880)