Non-Coding RNA Search

Ss1.1-Pig2-130D18.5

Sequence:


               
               TCCTGAGTCCTAATACCCTAGCAGTCTTTAATGCCTAAAAAAGAAGAAAAAAAAAAAAAA
AAAAGAGGGAGAAATGTAAAAGATATGGGAAAGTACGGAGAATAACTAACAAGCCGTTGT
GCACATTTTGTCATATTCAAGTCTTTGGCCTTAGGATTCTAGCACTTCAGGGTTCTAATG
ACCCCAGGAGTCTAAACTGAGGCGCATATATGTCTTATTTCTATACTTATAACCTTGGGA
AGAGAAAGCAGAAGAAAGACTTTGGGCTGTCTATACTGCTACTCACTGAGTGGGTTAGTT
GGGATGAGAGGGTGATTGTTAAGAAAGAAAGTTTCCAAAGAATCTAAAACCCTGGGATCC
TAGAGTCCTAGAGTTGGAGCTGATTCTCAGAGGTCATCCAGTTCAGAGCCTCCAGCCCCG
TGCAACCTCTCCTTGATTCTTCCTTGCTTTTGGCAGGCTTGCTTTCTTCCAAGACAGACT
CTTCTGTTGCTGATTGGCTGCAAGTATGAAAAAGCCCTTTTGTGTGTGTGTCTCCAAACT
CTGCTTCCTTGTAAGTCCACCACTATTCTGCTTTGGGGGCCACGCAAGTCACACGGGCTC
CCTCTGCTCCAGGGCAGCTCTTCACGTGTTTAAAGTTAAGTCCTTAAGTCCTTGCAGATT
GTAGCATTTGTTGCAGCTCTCAAGTGCATGTTGGGTCTCCTCATTGCTTTGTCATGTTTG
TCTGTGAGCTCACTTAACAAGAAGGCTGTGTCCTGTGTAGTAGAAGCCACATACAGGGGC
CAGTTCTAGACCCATTTCTTTGGGTTGGTTTTTCAGCCCCAGGTTTCTATACTGAGCAGG
TAATTCTAGAATTCAGATCCACATTATATTTGGTATAAGCCAAGCTTGATAGATTGAGGT
TCTGACTTTCCGTATTAATTCTATTGCTTGGGCCTTAGGCATAAAGCCTGCTTTCTGAGC
ATCTTTGAACAGGAGCAGTCTTCCTCACCCTTTGGGCTTTCTATAAATTGTTCAAGCCCA
GCTCCTTAGCCTTTGATCCTGTACAGAGGTTAAAACTCTGTGGCTCCGCAGGTTAAGAAC
CTGACTGGCGTCCATGAGTTTGCGGGTTCGATCCCTGGCCTCGCTCAGTGGGTTAGGATC
CAGCATTACTGCAAGACATTGGTGGCGTTGGTTGGCGGATGTGGCTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCTGAGTCCTAATACCCTAGCAGTCTTTAATGCCTAAAAAAGAAGAAAAAAAAAAAAAA
AAAAGAGGGAGAAATGTAAAAGATATGGGAAAGTACGGAGAATAACTAACAAGCCGTTGT
GCACATTTTGTCATATTCAAGTCTTTGGCCTTAGGATTCTAGCACTTCAGGGTTCTAATG
ACCCCAGGAGTCTAAACTGAGGCGCATATATGTCTTATTTCTATACTTATAACCTTGGGA
AGAGAAAGCAGAAGAAAGACTTTGGGCTGTCTATACTGCTACTCACTGAGTGGGTTAGTT
GGGATGAGAGGGTGATTGTTAAGAAAGAAAGTTTCCAAAGAATCTAAAACCCTGGGATCC
TAGAGTCCTAGAGTTGGAGCTGATTCTCAGAGGTCATCCAGTTCAGAGCCTCCAGCCCCG
TGCAACCTCTCCTTGATTCTTCCTTGCTTTTGGCAGGCTTGCTTTCTTCCAAGACAGACT
CTTCTGTTGCTGATTGGCTGCAAGTATGAAAAAGCCCTTTTGTGTGTGTGTCTCCAAACT
CTGCTTCCTTGTAAGTCCACCACTATTCTGCTTTGGGGGCCACGCAAGTCACACGGGCTC
CCTCTGCTCCAGGGCAGCTCTTCACGTGTTTAAAGTTAAGTCCTTAAGTCCTTGCAGATT
GTAGCATTTGTTGCAGCTCTCAAGTGCATGTTGGGTCTCCTCATTGCTTTGTCATGTTTG
TCTGTGAGCTCACTTAACAAGAAGGCTGTGTCCTGTGTAGTAGAAGCCACATACAGGGGC
CAGTTCTAGACCCATTTCTTTGGGTTGGTTTTTCAGCCCCAGGTTTCTATACTGAGCAGG
TAATTCTAGAATTCAGATCCACATTATATTTGGTATAAGCCAAGCTTGATAGATTGAGGT
TCTGACTTTCCGTATTAATTCTATTGCTTGGGCCTTAGGCATAAAGCCTGCTTTCTGAGC
ATCTTTGAACAGGAGCAGTCTTCCTCACCCTTTGGGCTTTCTATAAATTGTTCAAGCCCA
GCTCCTTAGCCTTTGATCCTGTACAGAGGTTAAAACTCTGTGGCTCCGCAGGTTAAGAAC
CTGACTGGCGTCCATGAGTTTGCGGGTTCGATCCCTGGCCTCGCTCAGTGGGTTAGGATC
CAGCATTACTGCAAGACATTGGTGGCGTTGGTTGGCGGATGTGGCTCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               919-1034, - strand, RNAz p=0.998356

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               919-1034, - strand, RNAz p=0.998356

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               78-572, gnl|bosTau2|chr13 (46575097-46574591)
               


               
               680-1059, gnl|bosTau2|chr13 (46573862-46573484)
               

               
               680-1059, gnl|Hg17|chr20 (33025882-33026246)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               78-572, gnl|bosTau2|chr13 (46575097-46574591)
               


               
               680-1059, gnl|bosTau2|chr13 (46573862-46573484)
               

               
               680-1059, gnl|Hg17|chr20 (33025882-33026246)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               csk (0.140746)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.140746)

	78-572, gnl\|bosTau2\|chr13 (46575097-46574591)

	680-1059, gnl\|bosTau2\|chr13 (46573862-46573484)
	680-1059, gnl\|Hg17\|chr20 (33025882-33026246)