Non-Coding RNA Search

Ss1.1-Pig2-130G09.5

Sequence:


               
               ACCTCGTACAAGCTCAAGAGACACCTGCAGTCACACGACAAACTGAGGCCCTTGGGGTGC
CCTGCAGAGGGCTGTGGCAAGAGCTTCACCACCGTGTATAACCTCAAAGCACACATGAAG
GGCCACGAACAGGAGAACTCATTCAAATGTGAGGTGTGTGAGGAGACTTTCCCCACACAG
GCCAAACTCAGCGCCCACCAGCGCAGCCACTTTGAGCCAGAGAGGCCCTATCAGTGCGCG
TTTTCGGGCTGCAAGAAGACGTTTATCACAGTGAGTGCCCTCTTTTCCCATAACCGCGCC
CACTTCAGGGAACAGGAACTCTTTTCCTGCTCCTTCCCTGGTTGCAGCAAACAGTACGAC
AAGGCTTGTAGGCTGAAAATTCACCTTCGGAGCCACACTGGCGAGAGACCGTTCCTTTGT
GATTTTGAGGGCTGTGGCTGGAACTTCACCAGCATGTCCAAACTCCTAAGGCACAAAAGG
AAGCACGATGATGATCGGAGGTTCATGTGCCCTGTGGAAGGCTGTGGGAAATCTTTCACA
AGGGCCGAGCATCTCAAAGGCCACAGCATAACCCACCTGGGCACAAAGCCTTTTGTGTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCTCGTACAAGCTCAAGAGACACCTGCAGTCACACGACAAACTGAGGCCCTTGGGGTGC
CCTGCAGAGGGCTGTGGCAAGAGCTTCACCACCGTGTATAACCTCAAAGCACACATGAAG
GGCCACGAACAGGAGAACTCATTCAAATGTGAGGTGTGTGAGGAGACTTTCCCCACACAG
GCCAAACTCAGCGCCCACCAGCGCAGCCACTTTGAGCCAGAGAGGCCCTATCAGTGCGCG
TTTTCGGGCTGCAAGAAGACGTTTATCACAGTGAGTGCCCTCTTTTCCCATAACCGCGCC
CACTTCAGGGAACAGGAACTCTTTTCCTGCTCCTTCCCTGGTTGCAGCAAACAGTACGAC
AAGGCTTGTAGGCTGAAAATTCACCTTCGGAGCCACACTGGCGAGAGACCGTTCCTTTGT
GATTTTGAGGGCTGTGGCTGGAACTTCACCAGCATGTCCAAACTCCTAAGGCACAAAAGG
AAGCACGATGATGATCGGAGGTTCATGTGCCCTGTGGAAGGCTGTGGGAAATCTTTCACA
AGGGCCGAGCATCTCAAAGGCCACAGCATAACCCACCTGGGCACAAAGCCTTTTGTGTGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8CEQ1_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8CEQ1_MOUSE

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-248, gnl|bosTau2|chr7 (16852025-16851778)
               

               
               1-248, gnl|canFam2|chr20 (3664365-3664570)
               

               
               1-248, gnl|danRer3|chr2 (44936252-44936049)
               

               
               1-248, gnl|dasNov1|scaffold_30502 (4368-4570)
               

               
               1-248, gnl|echTel1|scaffold_282379 (6525-6726)
               

               
               1-248, gnl|fr1|chrUn (293758821-293758616)
               

               
               1-248, gnl|galGal2|chr12 (10699406-10699610)
               

               
               1-248, gnl|hg17|chr3 (127676495-127676700)
               

               
               1-248, gnl|Hg17|chr3 (127676746-127676499)
               

               
               1-248, gnl|loxAfr1|scaffold_32352 (722-922)
               

               
               1-248, gnl|mm7|chr6 (90446089-90445884)
               

               
               1-248, gnl|Mm7|chr6 (90445836-90446083)
               

               
               1-248, gnl|monDom2|scaffold_5 (43577599-43577398)
               

               
               1-248, gnl|oryCun1|scaffold_134148 (1314-1109)
               

               
               1-248, gnl|panTro1|chrX (58951265-58951075)
               

               
               1-248, gnl|rheMac2|chr2 (46249883-46250088)
               

               
               1-248, gnl|rn3|chr4 (124875005-124874800)
               

               
               1-248, gnl|tetNig1|chrUn_random (4895392-4895594)
               

               
               1-248, gnl|xenTro1|scaffold_368 (952493-952292)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-248, gnl|bosTau2|chr7 (16852025-16851778)
               

               
               1-248, gnl|canFam2|chr20 (3664365-3664570)
               

               
               1-248, gnl|danRer3|chr2 (44936252-44936049)
               

               
               1-248, gnl|dasNov1|scaffold_30502 (4368-4570)
               

               
               1-248, gnl|echTel1|scaffold_282379 (6525-6726)
               

               
               1-248, gnl|fr1|chrUn (293758821-293758616)
               

               
               1-248, gnl|galGal2|chr12 (10699406-10699610)
               

               
               1-248, gnl|hg17|chr3 (127676495-127676700)
               

               
               1-248, gnl|Hg17|chr3 (127676746-127676499)
               

               
               1-248, gnl|loxAfr1|scaffold_32352 (722-922)
               

               
               1-248, gnl|mm7|chr6 (90446089-90445884)
               

               
               1-248, gnl|Mm7|chr6 (90445836-90446083)
               

               
               1-248, gnl|monDom2|scaffold_5 (43577599-43577398)
               

               
               1-248, gnl|oryCun1|scaffold_134148 (1314-1109)
               

               
               1-248, gnl|panTro1|chrX (58951265-58951075)
               

               
               1-248, gnl|rheMac2|chr2 (46249883-46250088)
               

               
               1-248, gnl|rn3|chr4 (124875005-124874800)
               

               
               1-248, gnl|tetNig1|chrUn_random (4895392-4895594)
               

               
               1-248, gnl|xenTro1|scaffold_368 (952493-952292)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cov (0.132153)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.132153)

	1-248, gnl\|bosTau2\|chr7 (16852025-16851778)
	1-248, gnl\|canFam2\|chr20 (3664365-3664570)
	1-248, gnl\|danRer3\|chr2 (44936252-44936049)
	1-248, gnl\|dasNov1\|scaffold_30502 (4368-4570)
	1-248, gnl\|echTel1\|scaffold_282379 (6525-6726)
	1-248, gnl\|fr1\|chrUn (293758821-293758616)
	1-248, gnl\|galGal2\|chr12 (10699406-10699610)
	1-248, gnl\|hg17\|chr3 (127676495-127676700)
	1-248, gnl\|Hg17\|chr3 (127676746-127676499)
	1-248, gnl\|loxAfr1\|scaffold_32352 (722-922)
	1-248, gnl\|mm7\|chr6 (90446089-90445884)
	1-248, gnl\|Mm7\|chr6 (90445836-90446083)
	1-248, gnl\|monDom2\|scaffold_5 (43577599-43577398)
	1-248, gnl\|oryCun1\|scaffold_134148 (1314-1109)
	1-248, gnl\|panTro1\|chrX (58951265-58951075)
	1-248, gnl\|rheMac2\|chr2 (46249883-46250088)
	1-248, gnl\|rn3\|chr4 (124875005-124874800)
	1-248, gnl\|tetNig1\|chrUn_random (4895392-4895594)
	1-248, gnl\|xenTro1\|scaffold_368 (952493-952292)