Non-Coding RNA Search

Ss1.1-Pig2-130J18.5

Sequence:


               
               TGCGTCCAAGGCCGAGAGGGGAGGGGGCTCGGCCTCGGGCGGGTGGGAGGCGTGATATGT
CTCTCGAAGATCCGTTTTTTGTAGTACGAGGCGAGGTGCAGAAGGCGGTGAACACAGCCC
GTGGGCTATACCAGCGGTGGTGCGAGCTCTTGCAGGAGGGCGCGGCGGTGGGACGCGAGG
AGCTGGACTGGACGACCAATGAGCTGAGGAATGGCTTGCGCAGCATCGAGTGGGACCTCG
AGGACCTGGAGGAGACCATCGGCATTGTGGAAGCCAACCCAGGCAAGTTCAAGCTCCCAG
CCGGAGACCTGCAGGAGAGAAAGGCGTTTGTGGAGAGGATGCGGGAAGCAGTCCAGGAAA
TGAAAGACCATATGGTCAGCCCCGCAGCCATAGCCTTCATGGAGAAGAATAATAGAGAGA
TGTTAACGGGCAAGCCAGCCACCCTGAAATCATCCAGCGACTTGCTGGACGCCAGTGTGG
TGTCGGCCACCTCTCGCTACATTGAAGAGCAGCAGGCTACACAGCAGCTGATCATGGACC
AACAGGATCAACAGCTGGAAATGGTGTCTGGGAGCATCCGGGTTCTGAAACACATGTCTG
GCCGAGTTGGGGAGGAGCTGGACGAGCAGGGCATTATGCTGGACGCCTTTGCTCATGAGA
TGGACCACACCCAGTCCCGGATGGATGGCGTCCTCAGGAAGATGGCCAAAGTATCCCACA
TGACCAGTGGTGAGTCCCCTGGGAGAAGCGATTTGGCAGTGGGATGAGGGGGGGAGTGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCGTCCAAGGCCGAGAGGGGAGGGGGCTCGGCCTCGGGCGGGTGGGAGGCGTGATATGT
CTCTCGAAGATCCGTTTTTTGTAGTACGAGGCGAGGTGCAGAAGGCGGTGAACACAGCCC
GTGGGCTATACCAGCGGTGGTGCGAGCTCTTGCAGGAGGGCGCGGCGGTGGGACGCGAGG
AGCTGGACTGGACGACCAATGAGCTGAGGAATGGCTTGCGCAGCATCGAGTGGGACCTCG
AGGACCTGGAGGAGACCATCGGCATTGTGGAAGCCAACCCAGGCAAGTTCAAGCTCCCAG
CCGGAGACCTGCAGGAGAGAAAGGCGTTTGTGGAGAGGATGCGGGAAGCAGTCCAGGAAA
TGAAAGACCATATGGTCAGCCCCGCAGCCATAGCCTTCATGGAGAAGAATAATAGAGAGA
TGTTAACGGGCAAGCCAGCCACCCTGAAATCATCCAGCGACTTGCTGGACGCCAGTGTGG
TGTCGGCCACCTCTCGCTACATTGAAGAGCAGCAGGCTACACAGCAGCTGATCATGGACC
AACAGGATCAACAGCTGGAAATGGTGTCTGGGAGCATCCGGGTTCTGAAACACATGTCTG
GCCGAGTTGGGGAGGAGCTGGACGAGCAGGGCATTATGCTGGACGCCTTTGCTCATGAGA
TGGACCACACCCAGTCCCGGATGGATGGCGTCCTCAGGAAGATGGCCAAAGTATCCCACA
TGACCAGTGGTGAGTCCCCTGGGAGAAGCGATTTGGCAGTGGGATGAGGGGGGGAGTGGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5U8S2_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5U8S2_HUMAN

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               91-270, gnl|bosTau2|chr7 (9339254-9339075)
               

               
               91-270, gnl|Hg17|chr19 (13121712-13121533)
               


               
               418-530, gnl|bosTau2|chr7 (9337115-9337003)
               

               
               418-530, gnl|Hg17|chr19 (13117211-13117089)
               


               
               630-762, gnl|bosTau2|chr7 (9336712-9336580)
               

               
               630-762, gnl|Hg17|chr19 (13116490-13116342)
               

               
               630-762, gnl|Mm7|chr8 (83253100-83253236)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               91-270, gnl|bosTau2|chr7 (9339254-9339075)
               

               
               91-270, gnl|Hg17|chr19 (13121712-13121533)
               


               
               418-530, gnl|bosTau2|chr7 (9337115-9337003)
               

               
               418-530, gnl|Hg17|chr19 (13117211-13117089)
               


               
               630-762, gnl|bosTau2|chr7 (9336712-9336580)
               

               
               630-762, gnl|Hg17|chr19 (13116490-13116342)
               

               
               630-762, gnl|Mm7|chr8 (83253100-83253236)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cag (0.302389)
               

               
               fty (0.17584)
               

               
               ill (0.175593)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.302389)
               

               
               fty (0.17584)
               

               
               ill (0.175593)

	91-270, gnl\|bosTau2\|chr7 (9339254-9339075)
	91-270, gnl\|Hg17\|chr19 (13121712-13121533)

	418-530, gnl\|bosTau2\|chr7 (9337115-9337003)
	418-530, gnl\|Hg17\|chr19 (13117211-13117089)

	630-762, gnl\|bosTau2\|chr7 (9336712-9336580)
	630-762, gnl\|Hg17\|chr19 (13116490-13116342)
	630-762, gnl\|Mm7\|chr8 (83253100-83253236)