Ss1.1-Pig2-130L06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCTTTAATTACGGTTAAATAGAAAGGAGGGGGAGTCCAATAAAAAACTGTACCAGCAAA GCCCTGGGATGCACCCCAGGGCCGCAGGGGCAGGTCCTGTGCCAGCCTGGCACCTTTCTT CTGTGGCTCCTGGGACGCTCACTACTTTGGACACGACCCTGGGTCCCTAGGAAGCTGGAG TCCTCCGCTGGGTAGAGAGCTCCCCTGGAGGCTCCACGAAGCTTCCCGTGGCCCAGCCTA GCCCAGGCCCTAGAAGAAGTCCGAGGCTTTGCGCCGGGCAGGGAGCTGCAGCAAATTGTC CGTGATGCAGGCTGGGTCCTGGCTGAGGGGGGTGCGTGTGGCAGAGCCGGGAGCCGGTGT GCTTGTGGGGGTCTGAGGCCCACCAGCTGGGGTCTTGAGGTGGGCCGAGCGGGCCGGGGA TGGTGTATAACTGGCTCGCAGGGCCCGGTCCGTGTACTTGCTAGCTGTCCTGCTCACAAG GCGCTGCAGCGCCGGGGACATGGCTGGGCTCAGGCCTTTGGGGGTAAGGCTGGCCAGGTT CTCCGTCACTCTTCGCAAAGCCTCCTGCTTCTTGGCCCGGTTCTTGGCGGCAGCCTCGTT GGCCATCTTTAGCCCCAGCCGCTCCCTGCGGCCGGGCTCCAAGATCTTGAAGGCTGGCCC AGGTGTCCTGTCCACGTAGGGGCTTTCGGATCCTTCCACTCTCAGGGGTGTGTTCTCTAC CTCCCCCCAGGTCATCAGCGGGGACTCGTTCACACCAGGGGCAGGAGAAGGGGTGGCAAC AAATCCAAACCCGCCCACTCGGGGGGACTCCTGGGGGATCAGCTCCTTGCCGTCCGGACC CACCTTGCCCTGTTTATGCTGGGCATTGAGGGCAGCAGCCTGCTGCAGCTGGGACCGGCT CAGTGCCTGGCTGAAGGGGTCCTTGAGGAAGCGCGTGTTCTTGTGCACCACCTGCCGGGG CTTCTTAAACAACTGCTCTTCGTCAGGGACGCCCTCTGGGTAGTACATGAGGGAGTTCTT GGCCTTGTACTTCCAGGTCTCCACGCCGGCCTGGCTGCTCTCGATGGCTTGGTGCTCAGC TGATGGAAGCTCCAGGTTATCTTTCTGCCTCTTCTCGAACTCCTCCTCAGCCTGGTACAG CCAGGCGTGGCGGGCGCGGCTCTTCTCCTTGGCCACCTCCATGACCTCCTGGAAGGAGGC GTTGTCCTCACTTGTGTACCGGCTCAAGAAGACATCCAGGCTGGGCAGGGCCGCCTCCTC CTCCTCCTTCACAGACTCTCCAGTGCCATCCTCCAGGCCGCGGCCCCGGCCCCGGGCCTT ACTGCCTACCACTCCACTGCCTGTGTGCACCTCAGGGGTTTCAAACGTGGCTGGAGTCAC ATAGGGCGGTGGAGGCTCTCTAGACATCTTGCCCAGGGCAGAGCCAAACTTGATGGCGAT CTGGCGCATGCGCTCCAAGTCTCCATTCTCCTCTGCCTCCAAGTACTCCTTCTGCGCCTG CAGCTTCTCCACGTCAGGGAAGAAATCCCTCTGGATGACCGTCTGGAGGCCCTCGATGTA CTCCTCCTCGTCCAGCACCCGCTGCCTGCTTGTTGCAGGCCCGGCCTCCCCGGCTGCGCG CTTCCTCCGAGGCCGGGACGCGGCAGGAAGCATCAGGGTCCGGGCCGGCGGCCCAGGCGT CTCCATCACTAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCTTTAATTACGGTTAAATAGAAAGGAGGGGGAGTCCAATAAAAAACTGTACCAGCAAA GCCCTGGGATGCACCCCAGGGCCGCAGGGGCAGGTCCTGTGCCAGCCTGGCACCTTTCTT CTGTGGCTCCTGGGACGCTCACTACTTTGGACACGACCCTGGGTCCCTAGGAAGCTGGAG TCCTCCGCTGGGTAGAGAGCTCCCCTGGAGGCTCCACGAAGCTTCCCGTGGCCCAGCCTA GCCCAGGCCCTAGAAGAAGTCCGAGGCTTTGCGCCGGGCAGGGAGCTGCAGCAAATTGTC CGTGATGCAGGCTGGGTCCTGGCTGAGGGGGGTGCGTGTGGCAGAGCCGGGAGCCGGTGT GCTTGTGGGGGTCTGAGGCCCACCAGCTGGGGTCTTGAGGTGGGCCGAGCGGGCCGGGGA TGGTGTATAACTGGCTCGCAGGGCCCGGTCCGTGTACTTGCTAGCTGTCCTGCTCACAAG GCGCTGCAGCGCCGGGGACATGGCTGGGCTCAGGCCTTTGGGGGTAAGGCTGGCCAGGTT CTCCGTCACTCTTCGCAAAGCCTCCTGCTTCTTGGCCCGGTTCTTGGCGGCAGCCTCGTT GGCCATCTTTAGCCCCAGCCGCTCCCTGCGGCCGGGCTCCAAGATCTTGAAGGCTGGCCC AGGTGTCCTGTCCACGTAGGGGCTTTCGGATCCTTCCACTCTCAGGGGTGTGTTCTCTAC CTCCCCCCAGGTCATCAGCGGGGACTCGTTCACACCAGGGGCAGGAGAAGGGGTGGCAAC AAATCCAAACCCGCCCACTCGGGGGGACTCCTGGGGGATCAGCTCCTTGCCGTCCGGACC CACCTTGCCCTGTTTATGCTGGGCATTGAGGGCAGCAGCCTGCTGCAGCTGGGACCGGCT CAGTGCCTGGCTGAAGGGGTCCTTGAGGAAGCGCGTGTTCTTGTGCACCACCTGCCGGGG CTTCTTAAACAACTGCTCTTCGTCAGGGACGCCCTCTGGGTAGTACATGAGGGAGTTCTT GGCCTTGTACTTCCAGGTCTCCACGCCGGCCTGGCTGCTCTCGATGGCTTGGTGCTCAGC TGATGGAAGCTCCAGGTTATCTTTCTGCCTCTTCTCGAACTCCTCCTCAGCCTGGTACAG CCAGGCGTGGCGGGCGCGGCTCTTCTCCTTGGCCACCTCCATGACCTCCTGGAAGGAGGC GTTGTCCTCACTTGTGTACCGGCTCAAGAAGACATCCAGGCTGGGCAGGGCCGCCTCCTC CTCCTCCTTCACAGACTCTCCAGTGCCATCCTCCAGGCCGCGGCCCCGGCCCCGGGCCTT ACTGCCTACCACTCCACTGCCTGTGTGCACCTCAGGGGTTTCAAACGTGGCTGGAGTCAC ATAGGGCGGTGGAGGCTCTCTAGACATCTTGCCCAGGGCAGAGCCAAACTTGATGGCGAT CTGGCGCATGCGCTCCAAGTCTCCATTCTCCTCTGCCTCCAAGTACTCCTTCTGCGCCTG CAGCTTCTCCACGTCAGGGAAGAAATCCCTCTGGATGACCGTCTGGAGGCCCTCGATGTA CTCCTCCTCGTCCAGCACCCGCTGCCTGCTTGTTGCAGGCCCGGCCTCCCCGGCTGCGCG CTTCCTCCGAGGCCGGGACGCGGCAGGAAGCATCAGGGTCCGGGCCGGCGGCCCAGGCGT CTCCATCACTAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 145-1229, + strand, RNAz p=0.999701 | |
| 1117-1235, - strand, RNAz p=0.735003 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 145-1229, + strand, RNAz p=0.999701 | |
| 1117-1235, - strand, RNAz p=0.735003 |
| Aligned organism(s): 58 entry(ies) | More info |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
| 78-253, gnl|bosTau2|chr10 (19877325-19877500) | |
| 78-253, gnl|Hg17|chr22 (17496095-17496278) | |
| 530-658, gnl|bosTau2|chr17 (44413982-44413855) | |
| 530-658, gnl|canFam2|chr26 (33113326-33113174) | |
| 530-658, gnl|danRer3|chr10 (36140808-36140687) | |
| 530-658, gnl|dasNov1|scaffold_6188 (63320-63169) | |
| 530-658, gnl|fr1|chrUn (42065119-42065277) | |
| 530-658, gnl|galGal2|chr15 (7819948-7819818) | |
| 530-658, gnl|hg17|chr22 (17497119-17497270) | |
| 530-658, gnl|Hg17|chr22 (17497127-17497254) | |
| 530-658, gnl|mm7|chr16 (17452543-17452694) | |
| 530-658, gnl|Mm7|chr16 (17452551-17452678) | |
| 530-658, gnl|monDom2|scaffold_141 (1726597-1726729) | |
| 530-658, gnl|oryCun1|scaffold_197741 (200-44) | |
| 530-658, gnl|panTro1|chr23_random (3311125-3311276) | |
| 530-658, gnl|rheMac2|chr10 (63176182-63176333) | |
| 530-658, gnl|rn3|chr11 (85112469-85112318) | |
| 530-658, gnl|tetNig1|chr4 (1577366-1577241) | |
| 530-658, gnl|xenTro1|scaffold_169 (1534106-1534231) | |
| 859-993, gnl|bosTau2|chr17 (44411726-44411592) | |
| 859-993, gnl|canFam2|chr26 (33108174-33108000) | |
| 859-993, gnl|danRer3|chr10 (36131746-36131599) | |
| 859-993, gnl|dasNov1|scaffold_6188 (57198-57023) | |
| 859-993, gnl|echTel1|scaffold_115232 (614-788) | |
| 859-993, gnl|fr1|chrUn (42065858-42066002) | |
| 859-993, gnl|galGal2|chr15 (7817724-7817583) | |
| 859-993, gnl|hg17|chr22 (17501225-17501400) | |
| 859-993, gnl|Hg17|chr22 (17501226-17501360) | |
| 859-993, gnl|mm7|chr16 (17456841-17457012) | |
| 859-993, gnl|Mm7|chr16 (17456842-17456976) | |
| 859-993, gnl|monDom2|scaffold_141 (1733211-1733355) | |
| 859-993, gnl|oryCun1|scaffold_132156 (11508-11331) | |
| 859-993, gnl|panTro1|chr23_random (3315132-3315307) | |
| 859-993, gnl|rheMac2|chr10 (63180558-63180733) | |
| 859-993, gnl|rn3|chr11 (85108716-85108544) | |
| 859-993, gnl|tetNig1|chr4 (1576657-1576505) | |
| 859-993, gnl|xenTro1|scaffold_169 (1537935-1538073) | |
| 1111-1284, gnl|bosTau2|chr17 (44411152-44410979) | |
| 1111-1284, gnl|canFam2|chr26 (33107554-33107345) | |
| 1111-1284, gnl|danRer3|chr10 (36128539-36128346) | |
| 1111-1284, gnl|dasNov1|scaffold_6188 (56490-56280) | |
| 1111-1284, gnl|echTel1|scaffold_202573 (1177-964) | |
| 1111-1284, gnl|fr1|chrUn (42066275-42066457) | |
| 1111-1284, gnl|galGal2|chr15 (7816331-7816142) | |
| 1111-1284, gnl|hg17|chr22 (17501906-17502117) | |
| 1111-1284, gnl|Hg17|chr22 (17501922-17502095) | |
| 1111-1284, gnl|mm7|chr16 (17457467-17457678) | |
| 1111-1284, gnl|Mm7|chr16 (17457483-17457655) | |
| 1111-1284, gnl|monDom2|scaffold_141 (1735070-1735260) | |
| 1111-1284, gnl|oryCun1|scaffold_132156 (10860-10647) | |
| 1111-1284, gnl|panTro1|chr23_random (3315813-3316024) | |
| 1111-1284, gnl|rheMac2|chr10 (63181258-63181469) | |
| 1111-1284, gnl|rn3|chr11 (85108027-85107816) | |
| 1111-1284, gnl|tetNig1|chr4 (1576223-1576034) | |
| 1111-1284, gnl|xenTro1|scaffold_169 (1542493-1542671) | |
| 1377-1553, gnl|bosTau2|chr17 (44410459-44410283) | |
| 1377-1553, gnl|Hg17|chr22 (17504787-17504963) | |
| 1377-1553, gnl|Mm7|chr16 (17459815-17459991) |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 78-253, gnl|bosTau2|chr10 (19877325-19877500) | |
| 78-253, gnl|Hg17|chr22 (17496095-17496278) | |
| 530-658, gnl|bosTau2|chr17 (44413982-44413855) | |
| 530-658, gnl|canFam2|chr26 (33113326-33113174) | |
| 530-658, gnl|danRer3|chr10 (36140808-36140687) | |
| 530-658, gnl|dasNov1|scaffold_6188 (63320-63169) | |
| 530-658, gnl|fr1|chrUn (42065119-42065277) | |
| 530-658, gnl|galGal2|chr15 (7819948-7819818) | |
| 530-658, gnl|hg17|chr22 (17497119-17497270) | |
| 530-658, gnl|Hg17|chr22 (17497127-17497254) | |
| 530-658, gnl|mm7|chr16 (17452543-17452694) | |
| 530-658, gnl|Mm7|chr16 (17452551-17452678) | |
| 530-658, gnl|monDom2|scaffold_141 (1726597-1726729) | |
| 530-658, gnl|oryCun1|scaffold_197741 (200-44) | |
| 530-658, gnl|panTro1|chr23_random (3311125-3311276) | |
| 530-658, gnl|rheMac2|chr10 (63176182-63176333) | |
| 530-658, gnl|rn3|chr11 (85112469-85112318) | |
| 530-658, gnl|tetNig1|chr4 (1577366-1577241) | |
| 530-658, gnl|xenTro1|scaffold_169 (1534106-1534231) | |
| 859-993, gnl|bosTau2|chr17 (44411726-44411592) | |
| 859-993, gnl|canFam2|chr26 (33108174-33108000) | |
| 859-993, gnl|danRer3|chr10 (36131746-36131599) | |
| 859-993, gnl|dasNov1|scaffold_6188 (57198-57023) | |
| 859-993, gnl|echTel1|scaffold_115232 (614-788) | |
| 859-993, gnl|fr1|chrUn (42065858-42066002) | |
| 859-993, gnl|galGal2|chr15 (7817724-7817583) | |
| 859-993, gnl|hg17|chr22 (17501225-17501400) | |
| 859-993, gnl|Hg17|chr22 (17501226-17501360) | |
| 859-993, gnl|mm7|chr16 (17456841-17457012) | |
| 859-993, gnl|Mm7|chr16 (17456842-17456976) | |
| 859-993, gnl|monDom2|scaffold_141 (1733211-1733355) | |
| 859-993, gnl|oryCun1|scaffold_132156 (11508-11331) | |
| 859-993, gnl|panTro1|chr23_random (3315132-3315307) | |
| 859-993, gnl|rheMac2|chr10 (63180558-63180733) | |
| 859-993, gnl|rn3|chr11 (85108716-85108544) | |
| 859-993, gnl|tetNig1|chr4 (1576657-1576505) | |
| 859-993, gnl|xenTro1|scaffold_169 (1537935-1538073) | |
| 1111-1284, gnl|bosTau2|chr17 (44411152-44410979) | |
| 1111-1284, gnl|canFam2|chr26 (33107554-33107345) | |
| 1111-1284, gnl|danRer3|chr10 (36128539-36128346) | |
| 1111-1284, gnl|dasNov1|scaffold_6188 (56490-56280) | |
| 1111-1284, gnl|echTel1|scaffold_202573 (1177-964) | |
| 1111-1284, gnl|fr1|chrUn (42066275-42066457) | |
| 1111-1284, gnl|galGal2|chr15 (7816331-7816142) | |
| 1111-1284, gnl|hg17|chr22 (17501906-17502117) | |
| 1111-1284, gnl|Hg17|chr22 (17501922-17502095) | |
| 1111-1284, gnl|mm7|chr16 (17457467-17457678) | |
| 1111-1284, gnl|Mm7|chr16 (17457483-17457655) | |
| 1111-1284, gnl|monDom2|scaffold_141 (1735070-1735260) | |
| 1111-1284, gnl|oryCun1|scaffold_132156 (10860-10647) | |
| 1111-1284, gnl|panTro1|chr23_random (3315813-3316024) | |
| 1111-1284, gnl|rheMac2|chr10 (63181258-63181469) | |
| 1111-1284, gnl|rn3|chr11 (85108027-85107816) | |
| 1111-1284, gnl|tetNig1|chr4 (1576223-1576034) | |
| 1111-1284, gnl|xenTro1|scaffold_169 (1542493-1542671) | |
| 1377-1553, gnl|bosTau2|chr17 (44410459-44410283) | |
| 1377-1553, gnl|Hg17|chr22 (17504787-17504963) | |
| 1377-1553, gnl|Mm7|chr16 (17459815-17459991) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.10408) | |
| eje (0.0988338) |