Non-Coding RNA Search

Ss1.1-Pig2-130L12.5

Sequence:


               
               TCCCTCCCAGTTTTTCTTTGGCTTCATGTCGTTTTGTCAGGCTGCTCATAAGCCGAAGCA
GCTTTGCTGGCCCACGGGGATGACCGCGAAGGAGGCCCCTCTGTGCGTGAGGGGCGTGCC
TTCTCCAGCCCCGTGCCCCGCAGTTCCCACCCAGGTGCAGGTGCGCTCTAGCCGGGTATC
AGAACGCTTGTTTTCCCTCTCCTGCCTTATCCTTTGCTGGCAGCTCCGATCAGGCCATGG
AGGGATGTGATGCTGGGCTGTGTTTACTAAACCTGCGGGTTTTCAGCCTCTTAAGCCCAG
CTCCAGTCTCTCACTAGTTGGGAGCCCCGGGCTGACTAACCTCTAGTATCTGAGCACCGG
TGGAGGGTGCTGTGGGTGTGCCGGGAGGCAGAAGCTTCTTCCGGCTCGGTGTTCTCTCCT
GGCCGCTCCTCCTGCTGCCTCTGACTCCTCAGACGGGTCTTGGGGTCTTGGTGTGAAGGC
CCCGGCTGCCCCCCGGACCTGTCTGCCAGCACTTGCTCTCCCGGGATCGTCCATCCCTCC
CGGCTGCATCTGCGGTGGGGATGGCGGCGTCCAGGCCCCTCTCTGGTGAAGGATCTGTTG
CTGCTTCTGTTTCTGGCTTCCCTCCCTCCCCGGCTGGTGACCCAGAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCCTCCCAGTTTTTCTTTGGCTTCATGTCGTTTTGTCAGGCTGCTCATAAGCCGAAGCA
GCTTTGCTGGCCCACGGGGATGACCGCGAAGGAGGCCCCTCTGTGCGTGAGGGGCGTGCC
TTCTCCAGCCCCGTGCCCCGCAGTTCCCACCCAGGTGCAGGTGCGCTCTAGCCGGGTATC
AGAACGCTTGTTTTCCCTCTCCTGCCTTATCCTTTGCTGGCAGCTCCGATCAGGCCATGG
AGGGATGTGATGCTGGGCTGTGTTTACTAAACCTGCGGGTTTTCAGCCTCTTAAGCCCAG
CTCCAGTCTCTCACTAGTTGGGAGCCCCGGGCTGACTAACCTCTAGTATCTGAGCACCGG
TGGAGGGTGCTGTGGGTGTGCCGGGAGGCAGAAGCTTCTTCCGGCTCGGTGTTCTCTCCT
GGCCGCTCCTCCTGCTGCCTCTGACTCCTCAGACGGGTCTTGGGGTCTTGGTGTGAAGGC
CCCGGCTGCCCCCCGGACCTGTCTGCCAGCACTTGCTCTCCCGGGATCGTCCATCCCTCC
CGGCTGCATCTGCGGTGGGGATGGCGGCGTCCAGGCCCCTCTCTGGTGAAGGATCTGTTG
CTGCTTCTGTTTCTGGCTTCCCTCCCTCCCCGGCTGGTGACCCAGAGC

Predicted RNA structure(s): 4 entry(ies)

More info

Predicted RNA structure(s): 4 entry(ies)

Help | Less info


               
               4-116, - strand, RNAz p=0.957318
               

               
               56-146, - strand, RNAz p=0.850312
               

               
               194-424, + strand, RNAz p=0.998235
               

               
               208-423, - strand, RNAz p=0.998174

Predicted RNA structure(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               4-116, - strand, RNAz p=0.957318
               

               
               56-146, - strand, RNAz p=0.850312
               

               
               194-424, + strand, RNAz p=0.998235
               

               
               208-423, - strand, RNAz p=0.998174

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               76-141, + strand, RNAmicro p=0.981631

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               76-141, + strand, RNAmicro p=0.981631

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of AK126326, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK126326, +

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

Help | Less info


               
               4-648, gnl|bosTau2|chr2 (73670143-73669507)
               

               
               4-648, gnl|canFam2|chr25 (46659307-46660046)
               

               
               4-648, gnl|echTel1|scaffold_310038 (91217-91796)
               

               
               4-648, gnl|galGal2|chr9 (14736459-14737211)
               

               
               4-648, gnl|hg17|chr2 (232497896-232498634)
               

               
               4-648, gnl|Hg17|chr2 (232498159-232498801)
               

               
               4-648, gnl|loxAfr1|scaffold_4856 (88434-87694)
               

               
               4-648, gnl|mm7|chr1 (86505928-86506639)
               

               
               4-648, gnl|Mm7|chr1 (86506177-86506799)
               

               
               4-648, gnl|monDom2|scaffold_167 (347803-348461)
               

               
               4-648, gnl|oryCun1|scaffold_191301 (97894-97218)
               

               
               4-648, gnl|panTro1|chr13 (123128570-123129310)
               

               
               4-648, gnl|rheMac2|chr12 (95687040-95687777)
               

               
               4-648, gnl|rn3|chr9 (85561021-85561732)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-648, gnl|bosTau2|chr2 (73670143-73669507)
               

               
               4-648, gnl|canFam2|chr25 (46659307-46660046)
               

               
               4-648, gnl|echTel1|scaffold_310038 (91217-91796)
               

               
               4-648, gnl|galGal2|chr9 (14736459-14737211)
               

               
               4-648, gnl|hg17|chr2 (232497896-232498634)
               

               
               4-648, gnl|Hg17|chr2 (232498159-232498801)
               

               
               4-648, gnl|loxAfr1|scaffold_4856 (88434-87694)
               

               
               4-648, gnl|mm7|chr1 (86505928-86506639)
               

               
               4-648, gnl|Mm7|chr1 (86506177-86506799)
               

               
               4-648, gnl|monDom2|scaffold_167 (347803-348461)
               

               
               4-648, gnl|oryCun1|scaffold_191301 (97894-97218)
               

               
               4-648, gnl|panTro1|chr13 (123128570-123129310)
               

               
               4-648, gnl|rheMac2|chr12 (95687040-95687777)
               

               
               4-648, gnl|rn3|chr9 (85561021-85561732)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               mas (0.210305)
               

               
               csp (0.161186)
               

               
               ret (0.128733)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)
               

               
               csp (0.161186)
               

               
               ret (0.128733)

	4-116, - strand, RNAz p=0.957318
	56-146, - strand, RNAz p=0.850312
	194-424, + strand, RNAz p=0.998235
	208-423, - strand, RNAz p=0.998174

	4-648, gnl\|bosTau2\|chr2 (73670143-73669507)
	4-648, gnl\|canFam2\|chr25 (46659307-46660046)
	4-648, gnl\|echTel1\|scaffold_310038 (91217-91796)
	4-648, gnl\|galGal2\|chr9 (14736459-14737211)
	4-648, gnl\|hg17\|chr2 (232497896-232498634)
	4-648, gnl\|Hg17\|chr2 (232498159-232498801)
	4-648, gnl\|loxAfr1\|scaffold_4856 (88434-87694)
	4-648, gnl\|mm7\|chr1 (86505928-86506639)
	4-648, gnl\|Mm7\|chr1 (86506177-86506799)
	4-648, gnl\|monDom2\|scaffold_167 (347803-348461)
	4-648, gnl\|oryCun1\|scaffold_191301 (97894-97218)
	4-648, gnl\|panTro1\|chr13 (123128570-123129310)
	4-648, gnl\|rheMac2\|chr12 (95687040-95687777)
	4-648, gnl\|rn3\|chr9 (85561021-85561732)