Non-Coding RNA Search

Ss1.1-Pig2-130M12.5

Sequence:


               
               CCCTCCCCTCTCCCCAGCCCCTCTTCACAGCTGGCCGCAGCTGGCCCAGGAGGCCCCTAT
TAAGAAGGAGGGGACACTGTTCACAAGTCTGGGCAGCGTCCACAAAATATGAGGGGCCAC
CCCTCTGTGCTGCTGCTATACCTGGGATTAACCACCTGCCTGGACTCCTCACCCAGCGGG
AAGCACGACCAAGGCCCAGAAGTCTTCCTGGACTCTCCAGAGGCCCAGAGCTTCCTGGGC
AGCCATAGCCGGATTCCGCGAGCCAATCACTGGGACCTGGAGCTGCTCACCCCTGGGAAC
CTGGAACGGGAGTGTTGGGAGGAGAGGTGTTCCTGGGAAGAGGCACGGGAATATTTTGAG
GATAATACTCTGACGGAGCGCTTTTGGGAGAATTACATCTACAACGGCAAAGGAGGGCGT
GGACGGGTTGATGTCGCAGGCCTGGCTGTGGGGCTGACATCCGGCATCCTGCTCATCGTC
CTGGCCGGCCTGGGGGCCTTTTGGTATTTGCACTGCCGTCTTCGGGGCCGAGGCCAGCAG
CCCAGTCCTCAAGAGGCCGAGCTCATCAGCCCCCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCTCCCCTCTCCCCAGCCCCTCTTCACAGCTGGCCGCAGCTGGCCCAGGAGGCCCCTAT
TAAGAAGGAGGGGACACTGTTCACAAGTCTGGGCAGCGTCCACAAAATATGAGGGGCCAC
CCCTCTGTGCTGCTGCTATACCTGGGATTAACCACCTGCCTGGACTCCTCACCCAGCGGG
AAGCACGACCAAGGCCCAGAAGTCTTCCTGGACTCTCCAGAGGCCCAGAGCTTCCTGGGC
AGCCATAGCCGGATTCCGCGAGCCAATCACTGGGACCTGGAGCTGCTCACCCCTGGGAAC
CTGGAACGGGAGTGTTGGGAGGAGAGGTGTTCCTGGGAAGAGGCACGGGAATATTTTGAG
GATAATACTCTGACGGAGCGCTTTTGGGAGAATTACATCTACAACGGCAAAGGAGGGCGT
GGACGGGTTGATGTCGCAGGCCTGGCTGTGGGGCTGACATCCGGCATCCTGCTCATCGTC
CTGGCCGGCCTGGGGGCCTTTTGGTATTTGCACTGCCGTCTTCGGGGCCGAGGCCAGCAG
CCCAGTCCTCAAGAGGCCGAGCTCATCAGCCCCCTG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q6IBF8_HUMAN

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q6IBF8_HUMAN

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

Help | Less info


               
               193-376, gnl|bosTau2|chr18 (48690325-48690508)
               

               
               193-376, gnl|Hg17|chr19 (54778604-54778787)
               

               
               193-376, gnl|Mm7|chr7 (41236115-41235932)
               


               
               414-555, gnl|bosTau2|chr18 (48692192-48692330)
               

               
               414-555, gnl|canFam2|chr1 (109821381-109821207)
               

               
               414-555, gnl|dasNov1|scaffold_219461 (1149-1320)
               

               
               414-555, gnl|echTel1|scaffold_313619 (37570-37743)
               

               
               414-555, gnl|hg17|chr19 (54783551-54783726)
               

               
               414-555, gnl|Hg17|chr19 (54783564-54783702)
               

               
               414-555, gnl|loxAfr1|scaffold_27189 (26283-26451)
               

               
               414-555, gnl|mm7|chr7 (41232621-41232448)
               

               
               414-555, gnl|Mm7|chr7 (41232614-41232470)
               

               
               414-555, gnl|monDom2|scaffold_105 (4091784-4091604)
               

               
               414-555, gnl|panTro1|chr20 (52145551-52145726)
               

               
               414-555, gnl|rheMac2|chr19 (55855282-55855457)
               

               
               414-555, gnl|rn3|chr1 (95606309-95606136)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               193-376, gnl|bosTau2|chr18 (48690325-48690508)
               

               
               193-376, gnl|Hg17|chr19 (54778604-54778787)
               

               
               193-376, gnl|Mm7|chr7 (41236115-41235932)
               


               
               414-555, gnl|bosTau2|chr18 (48692192-48692330)
               

               
               414-555, gnl|canFam2|chr1 (109821381-109821207)
               

               
               414-555, gnl|dasNov1|scaffold_219461 (1149-1320)
               

               
               414-555, gnl|echTel1|scaffold_313619 (37570-37743)
               

               
               414-555, gnl|hg17|chr19 (54783551-54783726)
               

               
               414-555, gnl|Hg17|chr19 (54783564-54783702)
               

               
               414-555, gnl|loxAfr1|scaffold_27189 (26283-26451)
               

               
               414-555, gnl|mm7|chr7 (41232621-41232448)
               

               
               414-555, gnl|Mm7|chr7 (41232614-41232470)
               

               
               414-555, gnl|monDom2|scaffold_105 (4091784-4091604)
               

               
               414-555, gnl|panTro1|chr20 (52145551-52145726)
               

               
               414-555, gnl|rheMac2|chr19 (55855282-55855457)
               

               
               414-555, gnl|rn3|chr1 (95606309-95606136)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cty (0.10408)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	193-376, gnl\|bosTau2\|chr18 (48690325-48690508)
	193-376, gnl\|Hg17\|chr19 (54778604-54778787)
	193-376, gnl\|Mm7\|chr7 (41236115-41235932)

	414-555, gnl\|bosTau2\|chr18 (48692192-48692330)
	414-555, gnl\|canFam2\|chr1 (109821381-109821207)
	414-555, gnl\|dasNov1\|scaffold_219461 (1149-1320)
	414-555, gnl\|echTel1\|scaffold_313619 (37570-37743)
	414-555, gnl\|hg17\|chr19 (54783551-54783726)
	414-555, gnl\|Hg17\|chr19 (54783564-54783702)
	414-555, gnl\|loxAfr1\|scaffold_27189 (26283-26451)
	414-555, gnl\|mm7\|chr7 (41232621-41232448)
	414-555, gnl\|Mm7\|chr7 (41232614-41232470)
	414-555, gnl\|monDom2\|scaffold_105 (4091784-4091604)
	414-555, gnl\|panTro1\|chr20 (52145551-52145726)
	414-555, gnl\|rheMac2\|chr19 (55855282-55855457)
	414-555, gnl\|rn3\|chr1 (95606309-95606136)