Non-Coding RNA Search

Ss1.1-Pig2-130M23.5

Sequence:


               
               GTGGTGTGAAGCCGTGGATGTCGGGGAGGCGCTTACCCCACGCCCCCAGCCTCCTAGCTG
TAACCCTCCCCGCTGACCTCATGGATCAACGTGTTAACAAGACTAACCATGACGGATGGA
CTGCTCCAGTCCCCCACTCTGCACAAATATGGGGGGCAAAGGGTCCCTCAGCCTGGCCCA
GACACTGGGGGGAATGTAGTGACCCATGTGGCCTCAGCCTTGTCCCCACCCACTGCCAAG
TACAATGACCCCTTCCTCTGAAACATCAGTGTTAGCCTCATCCCTGTCCCCAGCATGTGA
CTGGTCACTCCTGGGAGAGAAGCTCCCCATCCACGAGAGCCCCAGCTCTGCAGTGTGCCC
CTCGGTCTGTGGGCAGGGCAGGGGGTGGCCTACTCCTCCCCTGGTCCCCGCCCCTGCTGT
TGTTTGTGCTTTTGAAGAGTGTTAAATTATGGAAGCCCCTTGGGGGCACCCCCTCCCCCA
GAACCTCTTATTTATACTAAAGTTCCCTGTTTTCAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGTGTGAAGCCGTGGATGTCGGGGAGGCGCTTACCCCACGCCCCCAGCCTCCTAGCTG
TAACCCTCCCCGCTGACCTCATGGATCAACGTGTTAACAAGACTAACCATGACGGATGGA
CTGCTCCAGTCCCCCACTCTGCACAAATATGGGGGGCAAAGGGTCCCTCAGCCTGGCCCA
GACACTGGGGGGAATGTAGTGACCCATGTGGCCTCAGCCTTGTCCCCACCCACTGCCAAG
TACAATGACCCCTTCCTCTGAAACATCAGTGTTAGCCTCATCCCTGTCCCCAGCATGTGA
CTGGTCACTCCTGGGAGAGAAGCTCCCCATCCACGAGAGCCCCAGCTCTGCAGTGTGCCC
CTCGGTCTGTGGGCAGGGCAGGGGGTGGCCTACTCCTCCCCTGGTCCCCGCCCCTGCTGT
TGTTTGTGCTTTTGAAGAGTGTTAAATTATGGAAGCCCCTTGGGGGCACCCCCTCCCCCA
GAACCTCTTATTTATACTAAAGTTCCCTGTTTTCAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               279-423, - strand, RNAz p=0.762249

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               279-423, - strand, RNAz p=0.762249

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-466, gnl|bosTau2|chr18 (38182596-38183059)
               

               
               1-466, gnl|Hg17|chr19 (50979349-50978885)
               

               
               1-466, gnl|Mm7|chr7 (16764689-16765095)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-466, gnl|bosTau2|chr18 (38182596-38183059)
               

               
               1-466, gnl|Hg17|chr19 (50979349-50978885)
               

               
               1-466, gnl|Mm7|chr7 (16764689-16765095)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               ton (0.1755)
               

               
               eli (0.151814)
               

               
               hyp (0.142837)
               

               
               eje (0.0988338)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               ton (0.1755)
               

               
               eli (0.151814)
               

               
               hyp (0.142837)
               

               
               eje (0.0988338)

	1-466, gnl\|bosTau2\|chr18 (38182596-38183059)
	1-466, gnl\|Hg17\|chr19 (50979349-50978885)
	1-466, gnl\|Mm7\|chr7 (16764689-16765095)

	fli (0.202881)
	fcc (0.197785)
	ton (0.1755)
	eli (0.151814)
	hyp (0.142837)
	eje (0.0988338)