Ss1.1-Pig2-131C09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTCAGAGCCAGTGATAAAAGACAATGTGGTTGTGGTTTACGAGGTACTGGAAGAGATGC TTGACAATGGGTTTCCATTGGCTACTGAGTCGAACATCCTCAAAGAACTGATAAAGCCTC CCACTATCCTTCGAACAGTAGTCAACACCATCACAGGAAGCACCAATGTGGGTGACCAGC TTCCCACCGGGCAGCTGTCCGTGGTACCTTGGCGACGGACTGGGGTGAAATACACCAACA ATGAGGCCTATTTTGATGTGATTGAAGAGATTGATGCCATCATTGATAAGTCAGGGTCCA CCATCACTGCTGAGATCCAGGGGGTGATCGATGCCTGCGTCAAGCTGACCGGAATGCCCG ACCTCACGCTTTCCTTCATGAACCCCAGGTTGCTGGATGATGTCAGCTTCCATCCGTGTG TTCGCTTCAAGCGCTGGGAATCTGAGCGCATCCTGTCCTTCATTCCCCCTGATGGAAACT TCCGCCTGCTCTCTTACCATGTCAGTGCACAGAACCTGGTGGCGATTCCAGTGTACGTCA AACATAACATCAGTTTCCGGGACAGTAGTTCTCTCGGGCGCTTTGAAATAACAGTGGGGC CTAAGCAGACCATGGGGAAGACCATAGAGGGGGTGACTGTCGCCAGCCAGATGCCCAGAG GCGTCCTGAACATGAGCCTCACGCCGTCTCAGGGGACACACACGTTTGACCCAGTTACTA AGATGCTGTCCTGGGATGTGGGAAAAATAAACCCCCAAAAGCTACCAAGCTTGAAGGGGA CCATGAGTCTTCAGGCCGGAGCTTCCAAACCAGATGAGAACCCCACGATCAACCTGCAGT TTAAGATCCAGCAGCTGGCCATTTCTGGACTCAAAGTGAATCGTCTGGATATGTATGGCG AGAAGTACAAACCCTTTAAGGGCATAAAATACATGACCAAAGCTGGGAAGTTCCAAGTTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTCAGAGCCAGTGATAAAAGACAATGTGGTTGTGGTTTACGAGGTACTGGAAGAGATGC TTGACAATGGGTTTCCATTGGCTACTGAGTCGAACATCCTCAAAGAACTGATAAAGCCTC CCACTATCCTTCGAACAGTAGTCAACACCATCACAGGAAGCACCAATGTGGGTGACCAGC TTCCCACCGGGCAGCTGTCCGTGGTACCTTGGCGACGGACTGGGGTGAAATACACCAACA ATGAGGCCTATTTTGATGTGATTGAAGAGATTGATGCCATCATTGATAAGTCAGGGTCCA CCATCACTGCTGAGATCCAGGGGGTGATCGATGCCTGCGTCAAGCTGACCGGAATGCCCG ACCTCACGCTTTCCTTCATGAACCCCAGGTTGCTGGATGATGTCAGCTTCCATCCGTGTG TTCGCTTCAAGCGCTGGGAATCTGAGCGCATCCTGTCCTTCATTCCCCCTGATGGAAACT TCCGCCTGCTCTCTTACCATGTCAGTGCACAGAACCTGGTGGCGATTCCAGTGTACGTCA AACATAACATCAGTTTCCGGGACAGTAGTTCTCTCGGGCGCTTTGAAATAACAGTGGGGC CTAAGCAGACCATGGGGAAGACCATAGAGGGGGTGACTGTCGCCAGCCAGATGCCCAGAG GCGTCCTGAACATGAGCCTCACGCCGTCTCAGGGGACACACACGTTTGACCCAGTTACTA AGATGCTGTCCTGGGATGTGGGAAAAATAAACCCCCAAAAGCTACCAAGCTTGAAGGGGA CCATGAGTCTTCAGGCCGGAGCTTCCAAACCAGATGAGAACCCCACGATCAACCTGCAGT TTAAGATCCAGCAGCTGGCCATTTCTGGACTCAAAGTGAATCGTCTGGATATGTATGGCG AGAAGTACAAACCCTTTAAGGGCATAAAATACATGACCAAAGCTGGGAAGTTCCAAGTTC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 73 entry(ies) | More info |
| Aligned organism(s): 73 entry(ies) | Help | Less info |
| 1-157, gnl|bosTau2|chr27 (23513146-23513302) | |
| 1-157, gnl|canFam2|chr16 (26467753-26467600) | |
| 1-157, gnl|canFam2|chr16 (26467577-26467748) | |
| 1-157, gnl|danRer3|chr13 (26155188-26155036) | |
| 1-157, gnl|danRer3|chrUn (157628658-157628829) | |
| 1-157, gnl|dasNov1|scaffold_11233 (28878-28725) | |
| 1-157, gnl|dasNov1|scaffold_11233 (28702-28873) | |
| 1-157, gnl|echTel1|scaffold_53902 (2940-2788) | |
| 1-157, gnl|echTel1|scaffold_53902 (2775-2935) | |
| 1-157, gnl|fr1|chrUn (292850934-292851087) | |
| 1-157, gnl|fr1|chrUn (292851110-292850939) | |
| 1-157, gnl|galGal2|chrUn (879521-879673) | |
| 1-157, gnl|galGal2|chrUn (879696-879525) | |
| 1-157, gnl|hg17|chr8 (42134613-42134766) | |
| 1-157, gnl|Hg17|chr8 (42134632-42134788) | |
| 1-157, gnl|hg17|chr9 (68633687-68633868) | |
| 1-157, gnl|loxAfr1|scaffold_10094 (9517-9346) | |
| 1-157, gnl|loxAfr1|scaffold_13553 (45486-45333) | |
| 1-157, gnl|mm7|chr8 (21585134-21584981) | |
| 1-157, gnl|mm7|chr8 (21584958-21585129) | |
| 1-157, gnl|Mm7|chr8 (21585113-21584957) | |
| 1-157, gnl|monDom2|scaffold_1 (79897236-79897083) | |
| 1-157, gnl|monDom2|scaffold_1 (79897060-79897231) | |
| 1-157, gnl|oryCun1|scaffold_184425 (85703-85856) | |
| 1-157, gnl|oryCun1|scaffold_184425 (85879-85708) | |
| 1-157, gnl|panTro1|chr11 (52408241-52408422) | |
| 1-157, gnl|panTro1|chr7 (43553084-43553237) | |
| 1-157, gnl|rheMac2|chr15 (77584407-77584588) | |
| 1-157, gnl|rheMac2|chr8 (42736461-42736614) | |
| 1-157, gnl|rn3|chr16 (73693125-73693278) | |
| 1-157, gnl|rn3|chr16 (73693301-73693130) | |
| 1-157, gnl|tetNig1|chr12 (11295768-11295921) | |
| 1-157, gnl|tetNig1|chr12 (11295944-11295773) | |
| 1-157, gnl|xenTro1|scaffold_106 (447363-447210) | |
| 1-157, gnl|xenTro1|scaffold_106 (447189-447358) | |
| 380-514, gnl|bosTau2|chr27 (23519319-23519453) | |
| 380-514, gnl|canFam2|chr16 (26459679-26459538) | |
| 380-514, gnl|danRer3|chr13 (26153115-26152975) | |
| 380-514, gnl|dasNov1|scaffold_11233 (21408-21267) | |
| 380-514, gnl|echTel1|scaffold_191710 (6533-6392) | |
| 380-514, gnl|fr1|chrUn (292851655-292851795) | |
| 380-514, gnl|galGal2|chrUn (881657-881798) | |
| 380-514, gnl|hg17|chr8 (42142100-42142241) | |
| 380-514, gnl|Hg17|chr8 (42142101-42142235) | |
| 380-514, gnl|loxAfr1|scaffold_13553 (36547-36406) | |
| 380-514, gnl|mm7|chr8 (21578172-21578031) | |
| 380-514, gnl|Mm7|chr8 (21578169-21578035) | |
| 380-514, gnl|monDom2|scaffold_1 (79894662-79894521) | |
| 380-514, gnl|oryCun1|scaffold_184425 (90780-90921) | |
| 380-514, gnl|panTro1|chr7 (43560587-43560728) | |
| 380-514, gnl|rheMac2|chr8 (42743773-42743914) | |
| 380-514, gnl|rn3|chr16 (73701294-73701435) | |
| 380-514, gnl|tetNig1|chr12 (11296406-11296546) | |
| 380-514, gnl|xenTro1|scaffold_106 (444468-444327) | |
| 515-722, gnl|bosTau2|chr27 (23521295-23521502) | |
| 515-722, gnl|canFam2|chr16 (26457994-26458197) | |
| 515-722, gnl|danRer3|chrUn (157622452-157622657) | |
| 515-722, gnl|dasNov1|scaffold_49102 (8344-8140) | |
| 515-722, gnl|echTel1|scaffold_53902 (2251-2466) | |
| 515-722, gnl|fr1|chrUn (292852115-292851909) | |
| 515-722, gnl|galGal2|chrUn (882867-882664) | |
| 515-722, gnl|Hg17|chr8 (42143839-42144046) | |
| 515-722, gnl|hg17|chr9 (68633128-68633335) | |
| 515-722, gnl|loxAfr1|scaffold_43965 (12688-12888) | |
| 515-722, gnl|mm7|chr8 (21576563-21576769) | |
| 515-722, gnl|Mm7|chr8 (21576769-21576562) | |
| 515-722, gnl|monDom2|scaffold_1 (79889577-79889783) | |
| 515-722, gnl|oryCun1|scaffold_209362 (42130-42336) | |
| 515-722, gnl|panTro1|chr11 (52407682-52407889) | |
| 515-722, gnl|rheMac2|chr15 (77583852-77584059) | |
| 515-722, gnl|rn3|chr16 (73702951-73702745) | |
| 515-722, gnl|tetNig1|chr12 (11296849-11296643) | |
| 515-722, gnl|xenTro1|scaffold_106 (443260-443466) |
| Aligned organism(s): 73 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-157, gnl|bosTau2|chr27 (23513146-23513302) | |
| 1-157, gnl|canFam2|chr16 (26467753-26467600) | |
| 1-157, gnl|canFam2|chr16 (26467577-26467748) | |
| 1-157, gnl|danRer3|chr13 (26155188-26155036) | |
| 1-157, gnl|danRer3|chrUn (157628658-157628829) | |
| 1-157, gnl|dasNov1|scaffold_11233 (28878-28725) | |
| 1-157, gnl|dasNov1|scaffold_11233 (28702-28873) | |
| 1-157, gnl|echTel1|scaffold_53902 (2940-2788) | |
| 1-157, gnl|echTel1|scaffold_53902 (2775-2935) | |
| 1-157, gnl|fr1|chrUn (292850934-292851087) | |
| 1-157, gnl|fr1|chrUn (292851110-292850939) | |
| 1-157, gnl|galGal2|chrUn (879521-879673) | |
| 1-157, gnl|galGal2|chrUn (879696-879525) | |
| 1-157, gnl|hg17|chr8 (42134613-42134766) | |
| 1-157, gnl|Hg17|chr8 (42134632-42134788) | |
| 1-157, gnl|hg17|chr9 (68633687-68633868) | |
| 1-157, gnl|loxAfr1|scaffold_10094 (9517-9346) | |
| 1-157, gnl|loxAfr1|scaffold_13553 (45486-45333) | |
| 1-157, gnl|mm7|chr8 (21585134-21584981) | |
| 1-157, gnl|mm7|chr8 (21584958-21585129) | |
| 1-157, gnl|Mm7|chr8 (21585113-21584957) | |
| 1-157, gnl|monDom2|scaffold_1 (79897236-79897083) | |
| 1-157, gnl|monDom2|scaffold_1 (79897060-79897231) | |
| 1-157, gnl|oryCun1|scaffold_184425 (85703-85856) | |
| 1-157, gnl|oryCun1|scaffold_184425 (85879-85708) | |
| 1-157, gnl|panTro1|chr11 (52408241-52408422) | |
| 1-157, gnl|panTro1|chr7 (43553084-43553237) | |
| 1-157, gnl|rheMac2|chr15 (77584407-77584588) | |
| 1-157, gnl|rheMac2|chr8 (42736461-42736614) | |
| 1-157, gnl|rn3|chr16 (73693125-73693278) | |
| 1-157, gnl|rn3|chr16 (73693301-73693130) | |
| 1-157, gnl|tetNig1|chr12 (11295768-11295921) | |
| 1-157, gnl|tetNig1|chr12 (11295944-11295773) | |
| 1-157, gnl|xenTro1|scaffold_106 (447363-447210) | |
| 1-157, gnl|xenTro1|scaffold_106 (447189-447358) | |
| 380-514, gnl|bosTau2|chr27 (23519319-23519453) | |
| 380-514, gnl|canFam2|chr16 (26459679-26459538) | |
| 380-514, gnl|danRer3|chr13 (26153115-26152975) | |
| 380-514, gnl|dasNov1|scaffold_11233 (21408-21267) | |
| 380-514, gnl|echTel1|scaffold_191710 (6533-6392) | |
| 380-514, gnl|fr1|chrUn (292851655-292851795) | |
| 380-514, gnl|galGal2|chrUn (881657-881798) | |
| 380-514, gnl|hg17|chr8 (42142100-42142241) | |
| 380-514, gnl|Hg17|chr8 (42142101-42142235) | |
| 380-514, gnl|loxAfr1|scaffold_13553 (36547-36406) | |
| 380-514, gnl|mm7|chr8 (21578172-21578031) | |
| 380-514, gnl|Mm7|chr8 (21578169-21578035) | |
| 380-514, gnl|monDom2|scaffold_1 (79894662-79894521) | |
| 380-514, gnl|oryCun1|scaffold_184425 (90780-90921) | |
| 380-514, gnl|panTro1|chr7 (43560587-43560728) | |
| 380-514, gnl|rheMac2|chr8 (42743773-42743914) | |
| 380-514, gnl|rn3|chr16 (73701294-73701435) | |
| 380-514, gnl|tetNig1|chr12 (11296406-11296546) | |
| 380-514, gnl|xenTro1|scaffold_106 (444468-444327) | |
| 515-722, gnl|bosTau2|chr27 (23521295-23521502) | |
| 515-722, gnl|canFam2|chr16 (26457994-26458197) | |
| 515-722, gnl|danRer3|chrUn (157622452-157622657) | |
| 515-722, gnl|dasNov1|scaffold_49102 (8344-8140) | |
| 515-722, gnl|echTel1|scaffold_53902 (2251-2466) | |
| 515-722, gnl|fr1|chrUn (292852115-292851909) | |
| 515-722, gnl|galGal2|chrUn (882867-882664) | |
| 515-722, gnl|Hg17|chr8 (42143839-42144046) | |
| 515-722, gnl|hg17|chr9 (68633128-68633335) | |
| 515-722, gnl|loxAfr1|scaffold_43965 (12688-12888) | |
| 515-722, gnl|mm7|chr8 (21576563-21576769) | |
| 515-722, gnl|Mm7|chr8 (21576769-21576562) | |
| 515-722, gnl|monDom2|scaffold_1 (79889577-79889783) | |
| 515-722, gnl|oryCun1|scaffold_209362 (42130-42336) | |
| 515-722, gnl|panTro1|chr11 (52407682-52407889) | |
| 515-722, gnl|rheMac2|chr15 (77583852-77584059) | |
| 515-722, gnl|rn3|chr16 (73702951-73702745) | |
| 515-722, gnl|tetNig1|chr12 (11296849-11296643) | |
| 515-722, gnl|xenTro1|scaffold_106 (443260-443466) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hyp (0.142837) |