Ss1.1-Pig2-132L15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CACGGCACAATCTCAGACCCCAGCACTGCCAGTCCCAAGGAGAGTTATGCTCAGAACACC ATCCAAGTGGCCATTCAGAGTTTACGTTTCTTCAACAGCTTCGCAGCTCTTGATCTGCCT GCTTTTCAGTCTATTGTAGGGGCAGAGGGCTTGTCCCTTGCATTCCGGCACATCGCCAGC TCCCTACTGGGCCACTGCAGCCACGTCTCCTGTGAAAGCCTCCTTCATGAGGTCATCGTC TGTGTGGGCTACTTCACTGTCAACCACCCAGATAACCAGGTCATCGTACAGTCCGGCCGC CACCCGACGGTGCTGCAGAAGCTCTGCCAGTTGCCCTTCCAGTATTTCAGTGACCCTCGG CTGATCAAAGTGCTGTTTCCTTCACTTATCGCTGCTTGTTACAACAACCTTCAGAACAAG ATCATCCTGGAGCAAGAGATGAGCTGTGTTTTACTGGCCACGTTCATTCAGGATTTTGCA CAGACTCCAGGTCAAACAGATAACCAGCCTTATCAGCCCAAAGGAATATGCATGGGTTCC CAAGACTATCTTGAGCTGGCTAACAGATTTCCTCAGCAGGCCTGGGAAGAAGCTCGACAG TTTTTCTTAAAAAAAGAGAAAAAATAAATGGGTTGGTTTGAATTTGAGTACCATCATTAA TATTTTTAATTGTTCAAACATTCTAACTGTTCCTTAAGAAATTCATTTTCACATGTTTAT ACTTTGTAGATATGGTATATACTTTGCACTATTTATAATAACTGTAGATACTTTACTGTT GTTTCTGCAAGTTGAGTTTATTTCCTTTCTGCACAATATTTTGGAGTTTGGTAACTTACA TCCTATGATAATATATACTTTGCATTTGTAATAAGGGTAAAATTAGACAAAATTAGCAAG TCTGTTTTGTTATTGTAATAAAGTAACTTATTCTGTTTGCAGTGGTGACTTTTCTTGTTA AGGTATTAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CACGGCACAATCTCAGACCCCAGCACTGCCAGTCCCAAGGAGAGTTATGCTCAGAACACC ATCCAAGTGGCCATTCAGAGTTTACGTTTCTTCAACAGCTTCGCAGCTCTTGATCTGCCT GCTTTTCAGTCTATTGTAGGGGCAGAGGGCTTGTCCCTTGCATTCCGGCACATCGCCAGC TCCCTACTGGGCCACTGCAGCCACGTCTCCTGTGAAAGCCTCCTTCATGAGGTCATCGTC TGTGTGGGCTACTTCACTGTCAACCACCCAGATAACCAGGTCATCGTACAGTCCGGCCGC CACCCGACGGTGCTGCAGAAGCTCTGCCAGTTGCCCTTCCAGTATTTCAGTGACCCTCGG CTGATCAAAGTGCTGTTTCCTTCACTTATCGCTGCTTGTTACAACAACCTTCAGAACAAG ATCATCCTGGAGCAAGAGATGAGCTGTGTTTTACTGGCCACGTTCATTCAGGATTTTGCA CAGACTCCAGGTCAAACAGATAACCAGCCTTATCAGCCCAAAGGAATATGCATGGGTTCC CAAGACTATCTTGAGCTGGCTAACAGATTTCCTCAGCAGGCCTGGGAAGAAGCTCGACAG TTTTTCTTAAAAAAAGAGAAAAAATAAATGGGTTGGTTTGAATTTGAGTACCATCATTAA TATTTTTAATTGTTCAAACATTCTAACTGTTCCTTAAGAAATTCATTTTCACATGTTTAT ACTTTGTAGATATGGTATATACTTTGCACTATTTATAATAACTGTAGATACTTTACTGTT GTTTCTGCAAGTTGAGTTTATTTCCTTTCTGCACAATATTTTGGAGTTTGGTAACTTACA TCCTATGATAATATATACTTTGCATTTGTAATAAGGGTAAAATTAGACAAAATTAGCAAG TCTGTTTTGTTATTGTAATAAAGTAACTTATTCTGTTTGCAGTGGTGACTTTTCTTGTTA AGGTATTAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 1-129, gnl|bosTau2|chr10 (41094069-41093941) | |
| 1-129, gnl|canFam2|chr30 (42772576-42772462) | |
| 1-129, gnl|danRer3|chrUn (26397652-26397561) | |
| 1-129, gnl|dasNov1|scaffold_139454 (3033-2920) | |
| 1-129, gnl|echTel1|scaffold_269676 (6036-5922) | |
| 1-129, gnl|fr1|chrUn (225415919-225416037) | |
| 1-129, gnl|galGal2|chr10 (4124542-4124429) | |
| 1-129, gnl|hg17|chr15 (74460768-74460882) | |
| 1-129, gnl|Hg17|chr15 (74460902-74460774) | |
| 1-129, gnl|loxAfr1|scaffold_5263 (20630-20516) | |
| 1-129, gnl|mm7|chr9 (55615572-55615683) | |
| 1-129, gnl|Mm7|chr9 (55615703-55615578) | |
| 1-129, gnl|monDom2|scaffold_41 (17821891-17822005) | |
| 1-129, gnl|panTro1|chr16_random (24390951-24390837) | |
| 1-129, gnl|rheMac2|chr7 (55369129-55369243) | |
| 1-129, gnl|rn3|chr8 (59168219-59168330) | |
| 1-129, gnl|tetNig1|chr13 (6806464-6806347) | |
| 1-129, gnl|xenTro1|scaffold_62 (2288727-2288613) | |
| 277-472, gnl|bosTau2|chr10 (41062777-41062582) | |
| 277-472, gnl|canFam2|chr30 (42803893-42803742) | |
| 277-472, gnl|danRer3|chrUn (26432737-26432586) | |
| 277-472, gnl|dasNov1|scaffold_19145 (25002-25153) | |
| 277-472, gnl|echTel1|scaffold_302615 (15315-15466) | |
| 277-472, gnl|fr1|chrUn (225409626-225409776) | |
| 277-472, gnl|galGal2|chr10 (4141659-4141509) | |
| 277-472, gnl|hg17|chr15 (74433342-74433493) | |
| 277-472, gnl|Hg17|chr15 (74433539-74433344) | |
| 277-472, gnl|loxAfr1|scaffold_5263 (55641-55490) | |
| 277-472, gnl|mm7|chr9 (55585631-55585782) | |
| 277-472, gnl|Mm7|chr9 (55585828-55585633) | |
| 277-472, gnl|monDom2|scaffold_41 (17788389-17788540) | |
| 277-472, gnl|panTro1|chr16_random (24418498-24418347) | |
| 277-472, gnl|rheMac2|chr7 (55341061-55341212) | |
| 277-472, gnl|rn3|chr8 (59140804-59140955) | |
| 277-472, gnl|tetNig1|chr13 (6812557-6812407) | |
| 277-472, gnl|xenTro1|scaffold_62 (2304844-2304693) | |
| 517-963, gnl|bosTau2|chr10 (41057709-41057254) | |
| 517-963, gnl|Hg17|chr15 (74428139-74427665) | |
| 517-963, gnl|Mm7|chr9 (55580427-55580016) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-129, gnl|bosTau2|chr10 (41094069-41093941) | |
| 1-129, gnl|canFam2|chr30 (42772576-42772462) | |
| 1-129, gnl|danRer3|chrUn (26397652-26397561) | |
| 1-129, gnl|dasNov1|scaffold_139454 (3033-2920) | |
| 1-129, gnl|echTel1|scaffold_269676 (6036-5922) | |
| 1-129, gnl|fr1|chrUn (225415919-225416037) | |
| 1-129, gnl|galGal2|chr10 (4124542-4124429) | |
| 1-129, gnl|hg17|chr15 (74460768-74460882) | |
| 1-129, gnl|Hg17|chr15 (74460902-74460774) | |
| 1-129, gnl|loxAfr1|scaffold_5263 (20630-20516) | |
| 1-129, gnl|mm7|chr9 (55615572-55615683) | |
| 1-129, gnl|Mm7|chr9 (55615703-55615578) | |
| 1-129, gnl|monDom2|scaffold_41 (17821891-17822005) | |
| 1-129, gnl|panTro1|chr16_random (24390951-24390837) | |
| 1-129, gnl|rheMac2|chr7 (55369129-55369243) | |
| 1-129, gnl|rn3|chr8 (59168219-59168330) | |
| 1-129, gnl|tetNig1|chr13 (6806464-6806347) | |
| 1-129, gnl|xenTro1|scaffold_62 (2288727-2288613) | |
| 277-472, gnl|bosTau2|chr10 (41062777-41062582) | |
| 277-472, gnl|canFam2|chr30 (42803893-42803742) | |
| 277-472, gnl|danRer3|chrUn (26432737-26432586) | |
| 277-472, gnl|dasNov1|scaffold_19145 (25002-25153) | |
| 277-472, gnl|echTel1|scaffold_302615 (15315-15466) | |
| 277-472, gnl|fr1|chrUn (225409626-225409776) | |
| 277-472, gnl|galGal2|chr10 (4141659-4141509) | |
| 277-472, gnl|hg17|chr15 (74433342-74433493) | |
| 277-472, gnl|Hg17|chr15 (74433539-74433344) | |
| 277-472, gnl|loxAfr1|scaffold_5263 (55641-55490) | |
| 277-472, gnl|mm7|chr9 (55585631-55585782) | |
| 277-472, gnl|Mm7|chr9 (55585828-55585633) | |
| 277-472, gnl|monDom2|scaffold_41 (17788389-17788540) | |
| 277-472, gnl|panTro1|chr16_random (24418498-24418347) | |
| 277-472, gnl|rheMac2|chr7 (55341061-55341212) | |
| 277-472, gnl|rn3|chr8 (59140804-59140955) | |
| 277-472, gnl|tetNig1|chr13 (6812557-6812407) | |
| 277-472, gnl|xenTro1|scaffold_62 (2304844-2304693) | |
| 517-963, gnl|bosTau2|chr10 (41057709-41057254) | |
| 517-963, gnl|Hg17|chr15 (74428139-74427665) | |
| 517-963, gnl|Mm7|chr9 (55580427-55580016) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| cut (0.339847) | |
| cga (0.279096) | |
| cbe (0.239234) | |
| eye (0.170503) | |
| mga (0.160205) | |
| nmm (0.132802) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cut (0.339847) | |
| cga (0.279096) | |
| cbe (0.239234) | |
| eye (0.170503) | |
| mga (0.160205) | |
| nmm (0.132802) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) |