Non-Coding RNA Search

Ss1.1-Pig2-132P06.5

Sequence:


               
               GGCCTCAGGAGCCAACAGGAGCTGTGAGACCAGCTCTTCCAGGGGTAGCATCCCAACCCC
CACACCAAGGGAAGAAGAACAAGTACAGACTGATCAGCCACACTCCTTCTTACTGTGATG
AGTCGCTCTTTGGCTCTCGACCCAAGGGCACCAGTTGGGAAGCCCCGTGGATGGCGAAGG
GGGATGCTGCGAAGCTCCAGGCCCTCTTCTGGACACCCCCGGCTACCCCTAGGGGCAACC
ACTCGCCCCGCCCCAGGGAGACCCCAGTACGAGCTGTTCACCCAGCTGGTCCCTCCAAGA
CAGAGCCCAGGGTCGGGCCAGGCTCCCGGAGGTTGTCCATGGATGGGTTTGACTCTCCCC
ACCCTCCAAGGCAGGAACGTTCCCATTCCCTCACCCGCCTTAATGTCCCCAGCACGGGTC
GCCCACCCACCAGTCCCCTCCACGCAAACGGGGCTCGGGATCCCAGGCCTCTCCTGTCGG
GGGTGACCTTCCAGAGCCCCCCGTTGATTCCCAGGGCTCATTCAGTCAGTGTTTCAGTGC
CAGTTGTCCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCTCAGGAGCCAACAGGAGCTGTGAGACCAGCTCTTCCAGGGGTAGCATCCCAACCCC
CACACCAAGGGAAGAAGAACAAGTACAGACTGATCAGCCACACTCCTTCTTACTGTGATG
AGTCGCTCTTTGGCTCTCGACCCAAGGGCACCAGTTGGGAAGCCCCGTGGATGGCGAAGG
GGGATGCTGCGAAGCTCCAGGCCCTCTTCTGGACACCCCCGGCTACCCCTAGGGGCAACC
ACTCGCCCCGCCCCAGGGAGACCCCAGTACGAGCTGTTCACCCAGCTGGTCCCTCCAAGA
CAGAGCCCAGGGTCGGGCCAGGCTCCCGGAGGTTGTCCATGGATGGGTTTGACTCTCCCC
ACCCTCCAAGGCAGGAACGTTCCCATTCCCTCACCCGCCTTAATGTCCCCAGCACGGGTC
GCCCACCCACCAGTCCCCTCCACGCAAACGGGGCTCGGGATCCCAGGCCTCTCCTGTCGG
GGGTGACCTTCCAGAGCCCCCCGTTGATTCCCAGGGCTCATTCAGTCAGTGTTTCAGTGC
CAGTTGTCCCCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|14042630|dbj|BAB55328.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|14042630|dbj|BAB55328.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               165-444, - strand, RNAz p=0.862456

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               165-444, - strand, RNAz p=0.862456

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               86-552, gnl|bosTau2|chr17 (37830658-37830192)
               

               
               86-552, gnl|Hg17|chr12 (112091832-112092298)
               

               
               86-552, gnl|Mm7|chr5 (119843951-119843500)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               86-552, gnl|bosTau2|chr17 (37830658-37830192)
               

               
               86-552, gnl|Hg17|chr12 (112091832-112092298)
               

               
               86-552, gnl|Mm7|chr5 (119843951-119843500)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ece (0.229305)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)

	86-552, gnl\|bosTau2\|chr17 (37830658-37830192)
	86-552, gnl\|Hg17\|chr12 (112091832-112092298)
	86-552, gnl\|Mm7\|chr5 (119843951-119843500)