Non-Coding RNA Search

Ss1.1-Pig2-133B09.5

Sequence:


               
               TTTGGGTCAATGCCCCAAGTACCACTCTGGGCACAAGCAGGGCACCCCGTTCCCTGTCCC
TGACCTAGGCCCTAATGCCAACGACCACAGTGCCACCGAAGCTTCACTGGCCCTTGCAGG
CTGGCACCTGCTCTGCCCTAGAGTCCCTCTCCATGGTACCAGACCCGCACTGGGGGTAGT
TGTCTCCCTCCAACCCCTGCCCCCCATCCCAGGAGACAAACAGACTTTCCTTGGGGGACC
TCGGAAATCACTCTGGCTTAAGCAACACCTTCTTTTGCTGCCTCATCTCCTGCTGTCTCA
CCTGTGCCCGAGCTCTGCTTACACCATCCACATCCTCCCGGGCTCCGGGGCGGCCCTGCG
CACTGCAGGCATGCTGGATGAGGGGCCACTGACATCTGGCCCTCTTGTCAGAGAGCTGTG
AAGTATGCAGAGGGGGTGTCATCAGGACACTGCCCAGGCTTGGCTTGGGGGGATGACACA
GGCAAGACCCTGTCCTGCTCCTTCCTCTCACCTCCTCTCAATTTCCATTAAAGTTTCTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGGGTCAATGCCCCAAGTACCACTCTGGGCACAAGCAGGGCACCCCGTTCCCTGTCCC
TGACCTAGGCCCTAATGCCAACGACCACAGTGCCACCGAAGCTTCACTGGCCCTTGCAGG
CTGGCACCTGCTCTGCCCTAGAGTCCCTCTCCATGGTACCAGACCCGCACTGGGGGTAGT
TGTCTCCCTCCAACCCCTGCCCCCCATCCCAGGAGACAAACAGACTTTCCTTGGGGGACC
TCGGAAATCACTCTGGCTTAAGCAACACCTTCTTTTGCTGCCTCATCTCCTGCTGTCTCA
CCTGTGCCCGAGCTCTGCTTACACCATCCACATCCTCCCGGGCTCCGGGGCGGCCCTGCG
CACTGCAGGCATGCTGGATGAGGGGCCACTGACATCTGGCCCTCTTGTCAGAGAGCTGTG
AAGTATGCAGAGGGGGTGTCATCAGGACACTGCCCAGGCTTGGCTTGGGGGGATGACACA
GGCAAGACCCTGTCCTGCTCCTTCCTCTCACCTCCTCTCAATTTCCATTAAAGTTTCTTG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               72-188, - strand, RNAz p=0.550496
               

               
               419-528, - strand, RNAz p=0.99454

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               72-188, - strand, RNAz p=0.550496
               

               
               419-528, - strand, RNAz p=0.99454

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

Help | Less info


               
               1-540, gnl|bosTau2|chr8 (31475151-31475696)
               

               
               1-540, gnl|canFam2|chr25 (38125337-38124659)
               

               
               1-540, gnl|hg17|chr8 (22028396-22029061)
               

               
               1-540, gnl|Hg17|chr8 (22029066-22028534)
               

               
               1-540, gnl|loxAfr1|scaffold_31885 (32043-32718)
               

               
               1-540, gnl|mm7|chr14 (65217532-65216884)
               

               
               1-540, gnl|Mm7|chr14 (65216877-65217379)
               

               
               1-540, gnl|monDom2|scaffold_1 (73499529-73498807)
               

               
               1-540, gnl|panTro1|chr7 (22960927-22961592)
               

               
               1-540, gnl|rheMac2|chr8 (22038280-22038947)
               

               
               1-540, gnl|rn3|chr15 (50988134-50987500)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-540, gnl|bosTau2|chr8 (31475151-31475696)
               

               
               1-540, gnl|canFam2|chr25 (38125337-38124659)
               

               
               1-540, gnl|hg17|chr8 (22028396-22029061)
               

               
               1-540, gnl|Hg17|chr8 (22029066-22028534)
               

               
               1-540, gnl|loxAfr1|scaffold_31885 (32043-32718)
               

               
               1-540, gnl|mm7|chr14 (65217532-65216884)
               

               
               1-540, gnl|Mm7|chr14 (65216877-65217379)
               

               
               1-540, gnl|monDom2|scaffold_1 (73499529-73498807)
               

               
               1-540, gnl|panTro1|chr7 (22960927-22961592)
               

               
               1-540, gnl|rheMac2|chr8 (22038280-22038947)
               

               
               1-540, gnl|rn3|chr15 (50988134-50987500)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               nms (0.213858)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.213858)

	72-188, - strand, RNAz p=0.550496
	419-528, - strand, RNAz p=0.99454

	1-540, gnl\|bosTau2\|chr8 (31475151-31475696)
	1-540, gnl\|canFam2\|chr25 (38125337-38124659)
	1-540, gnl\|hg17\|chr8 (22028396-22029061)
	1-540, gnl\|Hg17\|chr8 (22029066-22028534)
	1-540, gnl\|loxAfr1\|scaffold_31885 (32043-32718)
	1-540, gnl\|mm7\|chr14 (65217532-65216884)
	1-540, gnl\|Mm7\|chr14 (65216877-65217379)
	1-540, gnl\|monDom2\|scaffold_1 (73499529-73498807)
	1-540, gnl\|panTro1\|chr7 (22960927-22961592)
	1-540, gnl\|rheMac2\|chr8 (22038280-22038947)
	1-540, gnl\|rn3\|chr15 (50988134-50987500)