Non-Coding RNA Search

Ss1.1-Pig2-133C14.5

Sequence:


               
               GGTGGCGGCCGCGGGAGCTCTGGCGGGAGCTCTGCATCAGCAGGGACCTATGGATTAGAT
TCTGTAAAGAAAAAGTGCCTTGAATGGCTTCTAAACAATTTGATGACTCACCAGAATGTT
GAACTTTTTAAAGAACTCAGTATAAATGTCATGAAACAACTCATTGGTTCATCTAACTTA
TTTGTGATGCAAGTGGAGATGGATGTTTATACAGCCCTTAAAAAGTGGATGTTCCTTCAA
CTTGTGCCTTCTTGGAATGGGTCTTTAAAACAGCTTCTGACTGAAACAGATGTCTGGTTT
TCTAAGAGGAAAAAAGATTTTGAAGGTATGACCTTCCTTGAAACTGAGCAAGGAAAACCA
TTTGTGTCAGTATTCAGACATTTAAGGTTACAGTATATTATCAGTGATTTGGCCTCTGCA
AGAATTATTGAACAAGATTCTCTGGTACCTTCAGAATGGCTGTCTGCTGTGTACAAACAG
CAGTGGCTTGCTATGCTCCGGGCAGAACAAGACAGTGAGGTGGGGCCTCAAGAAATCAAT
AAAGAAGAACTAGAGGGAAATAGCATGAGATGTGGTAGAAAGCTTGCCAAAGATGGTGAA
TACTGCTGGCGGTGGACAGGTTTTAACTTCGGCTTTGACCTGCTGGTAACTTACACCAAT
CGATACATCATTTTTAAACGCAACACACTGAATCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGGCGGCCGCGGGAGCTCTGGCGGGAGCTCTGCATCAGCAGGGACCTATGGATTAGAT
TCTGTAAAGAAAAAGTGCCTTGAATGGCTTCTAAACAATTTGATGACTCACCAGAATGTT
GAACTTTTTAAAGAACTCAGTATAAATGTCATGAAACAACTCATTGGTTCATCTAACTTA
TTTGTGATGCAAGTGGAGATGGATGTTTATACAGCCCTTAAAAAGTGGATGTTCCTTCAA
CTTGTGCCTTCTTGGAATGGGTCTTTAAAACAGCTTCTGACTGAAACAGATGTCTGGTTT
TCTAAGAGGAAAAAAGATTTTGAAGGTATGACCTTCCTTGAAACTGAGCAAGGAAAACCA
TTTGTGTCAGTATTCAGACATTTAAGGTTACAGTATATTATCAGTGATTTGGCCTCTGCA
AGAATTATTGAACAAGATTCTCTGGTACCTTCAGAATGGCTGTCTGCTGTGTACAAACAG
CAGTGGCTTGCTATGCTCCGGGCAGAACAAGACAGTGAGGTGGGGCCTCAAGAAATCAAT
AAAGAAGAACTAGAGGGAAATAGCATGAGATGTGGTAGAAAGCTTGCCAAAGATGGTGAA
TACTGCTGGCGGTGGACAGGTTTTAACTTCGGCTTTGACCTGCTGGTAACTTACACCAAT
CGATACATCATTTTTAAACGCAACACACTGAATCAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61861376|ref|XP_591699.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61861376|ref|XP_591699.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               352-454, + strand, RNAz p=0.590171

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               352-454, + strand, RNAz p=0.590171

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               36-175, gnl|bosTau2|chr12 (19835001-19834862)
               

               
               36-175, gnl|Hg17|chr5 (177546253-177546114)
               


               
               315-454, gnl|bosTau2|chr11 (48441552-48441413)
               

               
               315-454, gnl|canFam2|chr10 (71648285-71648148)
               

               
               315-454, gnl|danRer3|chrNA (84393772-84393937)
               

               
               315-454, gnl|dasNov1|scaffold_8711 (36300-36166)
               

               
               315-454, gnl|echTel1|scaffold_318828 (76898-76763)
               

               
               315-454, gnl|fr1|chrUn (107390914-107390703)
               

               
               315-454, gnl|Hg17|chr2 (69993604-69993743)
               

               
               315-454, gnl|hg17|chr5 (177545836-177545973)
               

               
               315-454, gnl|loxAfr1|scaffold_58878 (5463-5326)
               

               
               315-454, gnl|mm7|chr6 (86785602-86785737)
               

               
               315-454, gnl|Mm7|chr6 (86785740-86785601)
               

               
               315-454, gnl|monDom2|scaffold_1 (96721827-96721690)
               

               
               315-454, gnl|oryCun1|scaffold_203244 (243050-242913)
               

               
               315-454, gnl|panTro1|chr4 (185048444-185048581)
               

               
               315-454, gnl|rheMac2|chr6 (174754166-174754303)
               

               
               315-454, gnl|rn3|chr4 (121106861-121106996)
               

               
               315-454, gnl|tetNig1|chr4 (1410033-1410235)
               

               
               315-454, gnl|xenTro1|scaffold_110 (1389891-1389771)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               36-175, gnl|bosTau2|chr12 (19835001-19834862)
               

               
               36-175, gnl|Hg17|chr5 (177546253-177546114)
               


               
               315-454, gnl|bosTau2|chr11 (48441552-48441413)
               

               
               315-454, gnl|canFam2|chr10 (71648285-71648148)
               

               
               315-454, gnl|danRer3|chrNA (84393772-84393937)
               

               
               315-454, gnl|dasNov1|scaffold_8711 (36300-36166)
               

               
               315-454, gnl|echTel1|scaffold_318828 (76898-76763)
               

               
               315-454, gnl|fr1|chrUn (107390914-107390703)
               

               
               315-454, gnl|Hg17|chr2 (69993604-69993743)
               

               
               315-454, gnl|hg17|chr5 (177545836-177545973)
               

               
               315-454, gnl|loxAfr1|scaffold_58878 (5463-5326)
               

               
               315-454, gnl|mm7|chr6 (86785602-86785737)
               

               
               315-454, gnl|Mm7|chr6 (86785740-86785601)
               

               
               315-454, gnl|monDom2|scaffold_1 (96721827-96721690)
               

               
               315-454, gnl|oryCun1|scaffold_203244 (243050-242913)
               

               
               315-454, gnl|panTro1|chr4 (185048444-185048581)
               

               
               315-454, gnl|rheMac2|chr6 (174754166-174754303)
               

               
               315-454, gnl|rn3|chr4 (121106861-121106996)
               

               
               315-454, gnl|tetNig1|chr4 (1410033-1410235)
               

               
               315-454, gnl|xenTro1|scaffold_110 (1389891-1389771)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               lun (0.150489)
               

               
               csk (0.140746)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.150489)
               

               
               csk (0.140746)

	36-175, gnl\|bosTau2\|chr12 (19835001-19834862)
	36-175, gnl\|Hg17\|chr5 (177546253-177546114)

	315-454, gnl\|bosTau2\|chr11 (48441552-48441413)
	315-454, gnl\|canFam2\|chr10 (71648285-71648148)
	315-454, gnl\|danRer3\|chrNA (84393772-84393937)
	315-454, gnl\|dasNov1\|scaffold_8711 (36300-36166)
	315-454, gnl\|echTel1\|scaffold_318828 (76898-76763)
	315-454, gnl\|fr1\|chrUn (107390914-107390703)
	315-454, gnl\|Hg17\|chr2 (69993604-69993743)
	315-454, gnl\|hg17\|chr5 (177545836-177545973)
	315-454, gnl\|loxAfr1\|scaffold_58878 (5463-5326)
	315-454, gnl\|mm7\|chr6 (86785602-86785737)
	315-454, gnl\|Mm7\|chr6 (86785740-86785601)
	315-454, gnl\|monDom2\|scaffold_1 (96721827-96721690)
	315-454, gnl\|oryCun1\|scaffold_203244 (243050-242913)
	315-454, gnl\|panTro1\|chr4 (185048444-185048581)
	315-454, gnl\|rheMac2\|chr6 (174754166-174754303)
	315-454, gnl\|rn3\|chr4 (121106861-121106996)
	315-454, gnl\|tetNig1\|chr4 (1410033-1410235)
	315-454, gnl\|xenTro1\|scaffold_110 (1389891-1389771)