Non-Coding RNA Search

Ss1.1-Pig2-133D09.5

Sequence:


               
               AGTCTACAAAACATTTCTTTCATTTGCTTGAGTTCATGACTTTGACGGTCGCAAGCCTGC
CTTCTCCTAGTTGAGCACGTGTGTTCTCCCCTAGCTCCTCTTTTGTTGGCCCATCTGACC
TCTATGGTTAGGGTGTTTTTCACATGTAAACAAATGTAGCTTGCCAGCAAGTAAGGAGGA
AAGATGGGGCTGGGGGAGGACCACATTACCTTCAGGATGTCTGGAGATATCTATCACCAG
TGTAGATCCTTTCTTATACTTTAAGGGAGACTCCAGGCAGAGTGGGTTAGTCTGGCAGGC
CTGGACCATCTAGTGTTCACAAAAGTGTGACAGTTGGGATTAGCTGTGAATTTCTTAGGT
AGGATGGCATCTCTAGATTTTAGGGCACTTCTGAACCTCAATCCCTGGACAAGACAGTCA
TCACATAGGAACAGCCACTTCTTCACCTGGTGGCATAGGAGGGTAGAGAGCAGAGCGTGG
CTTTGTTTGGCCTTGGCTTATGTAGGTTGAGCCAGGTTTGTGTTTTCCCTGTCTATTTTC
CTTAATGGGATAGAAAGGATATATTCCAAATCCAGGTTGGTGTTTTCCCTATTTTCCTTA
ATGGGATAGAAAGGACATATTCCAAATCAGCCAGTCTGAGGGGAAGTGGAAGCCAGATAT
GAGAATCCTTTGAAGATCGTGAAATACTGACTTTCATTCTTTCAAGCTTATTTGTAAATA
TCTATTTGAATGCTGTGTATTTGTACAGGAATTTGAGCAAAAAATGTATAGAGTGTGATG
TCCTATTGGTATTCAGCCCTATAAATGTGTTTTTAACCTCTGGCATTCTGTGCTTATTTA
AAATAAGAAAACTTCTAACCATTTCTTTTGTGTATTTATGTTTAAAAGAAGTGACTTTAA
AATGGTCTTAACCTGTACCAGAAAGCAAAGTTAAAAGAAAAAAAAATTTTTTTGTGCTAG
TGTCCCAAAAGGTATTTTACTGTATATATTGTGGTAGCATGTTCTAAATCTAACAAGTAA
TGTGAATTTTAGATGTAAATATCTGCCACTTGATTTCCCCCCTTCCCCTACTCCCTTGAC
TGCTGTGATGTGAATTAAAGATGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTCTACAAAACATTTCTTTCATTTGCTTGAGTTCATGACTTTGACGGTCGCAAGCCTGC
CTTCTCCTAGTTGAGCACGTGTGTTCTCCCCTAGCTCCTCTTTTGTTGGCCCATCTGACC
TCTATGGTTAGGGTGTTTTTCACATGTAAACAAATGTAGCTTGCCAGCAAGTAAGGAGGA
AAGATGGGGCTGGGGGAGGACCACATTACCTTCAGGATGTCTGGAGATATCTATCACCAG
TGTAGATCCTTTCTTATACTTTAAGGGAGACTCCAGGCAGAGTGGGTTAGTCTGGCAGGC
CTGGACCATCTAGTGTTCACAAAAGTGTGACAGTTGGGATTAGCTGTGAATTTCTTAGGT
AGGATGGCATCTCTAGATTTTAGGGCACTTCTGAACCTCAATCCCTGGACAAGACAGTCA
TCACATAGGAACAGCCACTTCTTCACCTGGTGGCATAGGAGGGTAGAGAGCAGAGCGTGG
CTTTGTTTGGCCTTGGCTTATGTAGGTTGAGCCAGGTTTGTGTTTTCCCTGTCTATTTTC
CTTAATGGGATAGAAAGGATATATTCCAAATCCAGGTTGGTGTTTTCCCTATTTTCCTTA
ATGGGATAGAAAGGACATATTCCAAATCAGCCAGTCTGAGGGGAAGTGGAAGCCAGATAT
GAGAATCCTTTGAAGATCGTGAAATACTGACTTTCATTCTTTCAAGCTTATTTGTAAATA
TCTATTTGAATGCTGTGTATTTGTACAGGAATTTGAGCAAAAAATGTATAGAGTGTGATG
TCCTATTGGTATTCAGCCCTATAAATGTGTTTTTAACCTCTGGCATTCTGTGCTTATTTA
AAATAAGAAAACTTCTAACCATTTCTTTTGTGTATTTATGTTTAAAAGAAGTGACTTTAA
AATGGTCTTAACCTGTACCAGAAAGCAAAGTTAAAAGAAAAAAAAATTTTTTTGTGCTAG
TGTCCCAAAAGGTATTTTACTGTATATATTGTGGTAGCATGTTCTAAATCTAACAAGTAA
TGTGAATTTTAGATGTAAATATCTGCCACTTGATTTCCCCCCTTCCCCTACTCCCTTGAC
TGCTGTGATGTGAATTAAAGATGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               458-571, - strand, RNAz p=0.892839

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               458-571, - strand, RNAz p=0.892839

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               19-571, gnl|bosTau2|chr22 (37353103-37353658)
               

               
               19-571, gnl|Hg17|chr3 (51395449-51396155)
               

               
               19-571, gnl|Mm7|chr9 (106623471-106622766)
               


               
               625-1104, gnl|bosTau2|chr22 (37353673-37354158)
               

               
               625-1104, gnl|Hg17|chr3 (51396170-51396655)
               

               
               625-1104, gnl|Mm7|chr9 (106622751-106622287)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               19-571, gnl|bosTau2|chr22 (37353103-37353658)
               

               
               19-571, gnl|Hg17|chr3 (51395449-51396155)
               

               
               19-571, gnl|Mm7|chr9 (106623471-106622766)
               


               
               625-1104, gnl|bosTau2|chr22 (37353673-37354158)
               

               
               625-1104, gnl|Hg17|chr3 (51396170-51396655)
               

               
               625-1104, gnl|Mm7|chr9 (106622751-106622287)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fco (0.471624)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               hyp (0.142837)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.471624)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               hyp (0.142837)

	19-571, gnl\|bosTau2\|chr22 (37353103-37353658)
	19-571, gnl\|Hg17\|chr3 (51395449-51396155)
	19-571, gnl\|Mm7\|chr9 (106623471-106622766)

	625-1104, gnl\|bosTau2\|chr22 (37353673-37354158)
	625-1104, gnl\|Hg17\|chr3 (51396170-51396655)
	625-1104, gnl\|Mm7\|chr9 (106622751-106622287)