Non-Coding RNA Search

Ss1.1-Pig2-133E07.5

Sequence:


               
               AAGCCGGACACCCCCCCACCCCCGCCCCTGGCGGGACGCAAGCAGAGCTGGCCCACAGGG
AGGTCTGAGCACAGCCCGAGGGCCACCCCCCTGGACTCGCAGGAACCCGAAAAGGCACAG
AGGAGCCTTCGGGGCCAAAAAGGTGCTGGATCAAAAGAAACTCATAAAAGTACATGAATG
TTCTGAATCTACTAGTGGCCCCACCTCACCCAGGATGTAAAAACGAGAAGGTCTTTAACT
GGGTCATCTGTTTACTAGGCCGGATTCCAAACCACCCCTATGAAAGTTCCTCAGGTTTCT
GGACTGTTCCCCGGCCCGCAATGCTTACCTACAAAACTTTGTTTTTTACTCTCCCACAGA
GGCGCTGCTCGAACACCATTGGCTACCAAGGCAAAGAAGGCCTTTTTAACCTAAGACAAA
TGAGAGAAACAACACACATTTTTAAAGTCCATGTATATGTAGGGAGAAAAATACCTTCGG
GTAAAATATTCAACCAAATCTTACCAGTTATCTTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGCCGGACACCCCCCCACCCCCGCCCCTGGCGGGACGCAAGCAGAGCTGGCCCACAGGG
AGGTCTGAGCACAGCCCGAGGGCCACCCCCCTGGACTCGCAGGAACCCGAAAAGGCACAG
AGGAGCCTTCGGGGCCAAAAAGGTGCTGGATCAAAAGAAACTCATAAAAGTACATGAATG
TTCTGAATCTACTAGTGGCCCCACCTCACCCAGGATGTAAAAACGAGAAGGTCTTTAACT
GGGTCATCTGTTTACTAGGCCGGATTCCAAACCACCCCTATGAAAGTTCCTCAGGTTTCT
GGACTGTTCCCCGGCCCGCAATGCTTACCTACAAAACTTTGTTTTTTACTCTCCCACAGA
GGCGCTGCTCGAACACCATTGGCTACCAAGGCAAAGAAGGCCTTTTTAACCTAAGACAAA
TGAGAGAAACAACACACATTTTTAAAGTCCATGTATATGTAGGGAGAAAAATACCTTCGG
GTAAAATATTCAACCAAATCTTACCAGTTATCTTCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               330-448, - strand, RNAz p=0.613022

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               330-448, - strand, RNAz p=0.613022

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               31-476, gnl|bosTau2|chr4 (64012852-64012434)
               

               
               31-476, gnl|Hg17|chr7 (150710434-150711243)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               31-476, gnl|bosTau2|chr4 (64012852-64012434)
               

               
               31-476, gnl|Hg17|chr7 (150710434-150711243)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cte (0.29274)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)

	31-476, gnl\|bosTau2\|chr4 (64012852-64012434)
	31-476, gnl\|Hg17\|chr7 (150710434-150711243)