Non-Coding RNA Search

Ss1.1-Pig2-133H12.5

Sequence:


               
               AGGGTTAACACAGCTGAACTGTAAGAAAATTAGCCATAAATTTCTCATTTTTATCTGCAA
GTTGAAGTTTCAAACCTAGCTCCCTGGGTGGAATGATGATTTCACAATATTTAGTGAACA
TCCTTTTAAAACTGTTATGTTTTCAAGACAACAAAGATCATTCCTTTGGTTCTTTATAAA
ACAAAACTAGGGCATTACTCCTTTAATTTTTTAACAGCTAACAACAAAAATTCACAAGAA
AACAGCAAAGAATAGATTTATACATAACTCTAAAAGCATTTGTGCATGACACCCAAACCA
TGCACATGTTCAAATATTTGTGGCAGAAAGTGATCAGAGCAAGTAGGATAAGCCCCAGCA
TGATGGAAACTGTAGGGGAGTATTTGGGGCAAGGAGATGCAATATTATATCTACTTTAAA
GTTATACTGCATAACAACCAAACAGTGATTTAAAAATTATAACCAACTATTCATATGAAT
GACATCTGACCTACATTCTCTTTCTATTTATGATCCATTCAATGGTATAAAAAACCATAA
AAGCTCTAAATAATTCATAAATGCAAATATATTTAAGTTTTTGTAGTTATAAAGGCTTAG
ATATAATGCAACTAGGGAAAAAAAACTCCAATAGAAAAAGCAAAAAATAATTAGGCAACA
AAGTATTTTCAAACCCAAATTCCTGCTTCCAACTTCAAATAGTTTTTACTATAAACACAA
AATGAGTGTTTATTCACCAGTAGGAGGCTGGACTAGATGAACTCTATTATTTCTTTCCAA
ATCTAATACTCCATGAAAATTATGCTTTCTCTGCTTTTTTATTTTACG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGGTTAACACAGCTGAACTGTAAGAAAATTAGCCATAAATTTCTCATTTTTATCTGCAA
GTTGAAGTTTCAAACCTAGCTCCCTGGGTGGAATGATGATTTCACAATATTTAGTGAACA
TCCTTTTAAAACTGTTATGTTTTCAAGACAACAAAGATCATTCCTTTGGTTCTTTATAAA
ACAAAACTAGGGCATTACTCCTTTAATTTTTTAACAGCTAACAACAAAAATTCACAAGAA
AACAGCAAAGAATAGATTTATACATAACTCTAAAAGCATTTGTGCATGACACCCAAACCA
TGCACATGTTCAAATATTTGTGGCAGAAAGTGATCAGAGCAAGTAGGATAAGCCCCAGCA
TGATGGAAACTGTAGGGGAGTATTTGGGGCAAGGAGATGCAATATTATATCTACTTTAAA
GTTATACTGCATAACAACCAAACAGTGATTTAAAAATTATAACCAACTATTCATATGAAT
GACATCTGACCTACATTCTCTTTCTATTTATGATCCATTCAATGGTATAAAAAACCATAA
AAGCTCTAAATAATTCATAAATGCAAATATATTTAAGTTTTTGTAGTTATAAAGGCTTAG
ATATAATGCAACTAGGGAAAAAAAACTCCAATAGAAAAAGCAAAAAATAATTAGGCAACA
AAGTATTTTCAAACCCAAATTCCTGCTTCCAACTTCAAATAGTTTTTACTATAAACACAA
AATGAGTGTTTATTCACCAGTAGGAGGCTGGACTAGATGAACTCTATTATTTCTTTCCAA
ATCTAATACTCCATGAAAATTATGCTTTCTCTGCTTTTTTATTTTACG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               5-418, gnl|bosTau2|chr2 (72036375-72035951)
               

               
               5-418, gnl|Hg17|chr2 (233458092-233457672)
               

               
               5-418, gnl|Mm7|chr1 (87286770-87286361)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-418, gnl|bosTau2|chr2 (72036375-72035951)
               

               
               5-418, gnl|Hg17|chr2 (233458092-233457672)
               

               
               5-418, gnl|Mm7|chr1 (87286770-87286361)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               cbe (0.239234)
               

               
               ret (0.128733)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)
               

               
               ret (0.128733)

	5-418, gnl\|bosTau2\|chr2 (72036375-72035951)
	5-418, gnl\|Hg17\|chr2 (233458092-233457672)
	5-418, gnl\|Mm7\|chr1 (87286770-87286361)