Non-Coding RNA Search

Ss1.1-Pig2-133O02.5

Sequence:


               
               GTGAGACTTTCGACTACTCGGAGCTGGCCAGCCTCGTCGTGAGCTATTTACAGACCTCAG
GGTACAGCATCAGCACATCCTCTGCCTCCATCTCTTCTGCAGACATCCTGGCTGCACTCC
AGCGGGATGACGTGCGTCAGTATCTCCAGCAGTTCCTGACGGGCCCTCAGGGTCCCCCCG
GTCCACCGGGAGCCAGCGGAGATTGGTCCCTCCAGTCTTTGGACTACGCCGAGCTGAGCA
GCCGCATCCTCAGCTACATGTCCAGCTCCGGAGTCAGCATTGGGCTTCCTGGCCCCCCGG
GACCACCAGGCTTGCCAGGCACATCCTACGAGGAACTCCTCTCCTTGCTCCAAGGGTCTG
AATTCAGAGGCATCGTCGGACCCCCAGGTCCCCCTGGGCCACCAGTGCTTCCAGGCAGCA
TGTGGTCCAGCATCAACATGGAGGAGCTCTCAGCCTACCTGCAGACTGCCGGGCTGTCAT
CCATCCCAGGCCCTCCTGGCCCTCCTGGTCCCCCGGGCCCTCGAGGGCCTCCGGGTGTCT
CAGGAGCTCTGGCGACATATGCAGCTGAAAACAGTGACAGCTTCCGGAGTGAGCTCATCA
GCTACCTCACAAGTCCTGATGTGCGTAGCTTCATTGTCGGCCCCCCTGGCCCCCCTGGCC
CCCCTGGGGAAAGCCGCCTGGTGTCGGTGGACAGCTCCTATAGCCTGGACAGCAGCTCCT
CCTCCCTCAGTCGGGGCAGCTCCTACAGCTCTTCCATGGGCATAGGAGGAGCCAGTGGGG
GCTCCCTGGGCGAAGGGGGAGCCTTTGGCCTGGACATGGGCATGGGCCGGGGCTATGGGA
CAGTGGCAGAAGGTGGCATGTTCGGTGGCAATGGTGGCTTCGGGGCCGGCTATGCCGGAG
GTCTGGACTACAACGAGCTGGCCGTTCGGGTGTCCGAGAGCATGCAGCGTCAGGGTCTGC
TCCAAGGGATGGCCTACACGGTGCAGGGCCCGCCAGGCCGGCCTGGGCCCCAGGGGCCCC
CTGGAGTCAGCAAGGTCTTCTCTGCCTACAGCAATGTGACTGCGGATCTCATGGACTTTT
TCAGAACTTATGGAGCCATCCCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGAGACTTTCGACTACTCGGAGCTGGCCAGCCTCGTCGTGAGCTATTTACAGACCTCAG
GGTACAGCATCAGCACATCCTCTGCCTCCATCTCTTCTGCAGACATCCTGGCTGCACTCC
AGCGGGATGACGTGCGTCAGTATCTCCAGCAGTTCCTGACGGGCCCTCAGGGTCCCCCCG
GTCCACCGGGAGCCAGCGGAGATTGGTCCCTCCAGTCTTTGGACTACGCCGAGCTGAGCA
GCCGCATCCTCAGCTACATGTCCAGCTCCGGAGTCAGCATTGGGCTTCCTGGCCCCCCGG
GACCACCAGGCTTGCCAGGCACATCCTACGAGGAACTCCTCTCCTTGCTCCAAGGGTCTG
AATTCAGAGGCATCGTCGGACCCCCAGGTCCCCCTGGGCCACCAGTGCTTCCAGGCAGCA
TGTGGTCCAGCATCAACATGGAGGAGCTCTCAGCCTACCTGCAGACTGCCGGGCTGTCAT
CCATCCCAGGCCCTCCTGGCCCTCCTGGTCCCCCGGGCCCTCGAGGGCCTCCGGGTGTCT
CAGGAGCTCTGGCGACATATGCAGCTGAAAACAGTGACAGCTTCCGGAGTGAGCTCATCA
GCTACCTCACAAGTCCTGATGTGCGTAGCTTCATTGTCGGCCCCCCTGGCCCCCCTGGCC
CCCCTGGGGAAAGCCGCCTGGTGTCGGTGGACAGCTCCTATAGCCTGGACAGCAGCTCCT
CCTCCCTCAGTCGGGGCAGCTCCTACAGCTCTTCCATGGGCATAGGAGGAGCCAGTGGGG
GCTCCCTGGGCGAAGGGGGAGCCTTTGGCCTGGACATGGGCATGGGCCGGGGCTATGGGA
CAGTGGCAGAAGGTGGCATGTTCGGTGGCAATGGTGGCTTCGGGGCCGGCTATGCCGGAG
GTCTGGACTACAACGAGCTGGCCGTTCGGGTGTCCGAGAGCATGCAGCGTCAGGGTCTGC
TCCAAGGGATGGCCTACACGGTGCAGGGCCCGCCAGGCCGGCCTGGGCCCCAGGGGCCCC
CTGGAGTCAGCAAGGTCTTCTCTGCCTACAGCAATGTGACTGCGGATCTCATGGACTTTT
TCAGAACTTATGGAGCCATCCCAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               448-614, - strand, RNAz p=0.994821

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               448-614, - strand, RNAz p=0.994821

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               448-614, gnl|bosTau2|chr26 (16268702-16268869)
               

               
               448-614, gnl|Hg17|chr10 (105784533-105784367)
               

               
               448-614, gnl|Mm7|chr19 (47549988-47549821)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               448-614, gnl|bosTau2|chr26 (16268702-16268869)
               

               
               448-614, gnl|Hg17|chr10 (105784533-105784367)
               

               
               448-614, gnl|Mm7|chr19 (47549988-47549821)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.367692)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.367692)

	448-614, gnl\|bosTau2\|chr26 (16268702-16268869)
	448-614, gnl\|Hg17\|chr10 (105784533-105784367)
	448-614, gnl\|Mm7\|chr19 (47549988-47549821)