Non-Coding RNA Search

Ss1.1-Pig2-137C18.5

Sequence:


               
               CATGGTGTCTGCGCGCTTCTCTCTGGGGGTGGCTGCGATGAGAGGGATGTTCCTGGTGCT
GCTCTGCGTCTCCCGATCTTCCGCCAGTTGCGGCATCCAGAAAAGCAACATTGCGGAGAC
TTCAGAGGAGGGTCTGGTCAACGAAGAGGAGTTCCCATGGGTGGTGTCGCTGCAGGATTC
CCAGTATACCCACCTGGCTTTTGGCAGCATCCTCAGTGAGTTCTGGATCCTCAGCATCGC
ATCTGCCTTTCAGAACAGGAAGGATGCTGTCGCTATAGTGGGTATAGCTAAGATGGATGC
AAAACTGATTGCTCACGAAGAGTATCCAGTCAACACCATCATCATCCATGAGGACTTTGA
TAATGTAACGATGAAAAACAACATTAGCCCTGCTGAAGACAGACACGGCGATAAAGTTCA
ACAGCCTGGTCCAACCCATTTGCTTCCTCGGCAGAAAGCTGCATATGCCACCCACCTTGG
AGAACTGCTGGGTGGCAGGATGGAATCCTACATCTGCAACAGGAAATCACATGACGATGA
GTATCCTGAGGAAAATCTCCGTGAATGACATCGACCTGTGCCCCTTAAACAAAATCCAGA
AGACAGGATGTGGCAATCACATAGAGCTGGAAACCGACTCCGTCTGCTTGGGGGACCCCG
GAAACCCAATGATGTGCCAGCTGAAGGAACTGAGTCTGTGGGTGCGGAGAGGAATCCTGT
CCCAAGGTGGTGAGAAGTGCCCTGGCCTGTTCCTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATGGTGTCTGCGCGCTTCTCTCTGGGGGTGGCTGCGATGAGAGGGATGTTCCTGGTGCT
GCTCTGCGTCTCCCGATCTTCCGCCAGTTGCGGCATCCAGAAAAGCAACATTGCGGAGAC
TTCAGAGGAGGGTCTGGTCAACGAAGAGGAGTTCCCATGGGTGGTGTCGCTGCAGGATTC
CCAGTATACCCACCTGGCTTTTGGCAGCATCCTCAGTGAGTTCTGGATCCTCAGCATCGC
ATCTGCCTTTCAGAACAGGAAGGATGCTGTCGCTATAGTGGGTATAGCTAAGATGGATGC
AAAACTGATTGCTCACGAAGAGTATCCAGTCAACACCATCATCATCCATGAGGACTTTGA
TAATGTAACGATGAAAAACAACATTAGCCCTGCTGAAGACAGACACGGCGATAAAGTTCA
ACAGCCTGGTCCAACCCATTTGCTTCCTCGGCAGAAAGCTGCATATGCCACCCACCTTGG
AGAACTGCTGGGTGGCAGGATGGAATCCTACATCTGCAACAGGAAATCACATGACGATGA
GTATCCTGAGGAAAATCTCCGTGAATGACATCGACCTGTGCCCCTTAAACAAAATCCAGA
AGACAGGATGTGGCAATCACATAGAGCTGGAAACCGACTCCGTCTGCTTGGGGGACCCCG
GAAACCCAATGATGTGCCAGCTGAAGGAACTGAGTCTGTGGGTGCGGAGAGGAATCCTGT
CCCAAGGTGGTGAGAAGTGCCCTGGCCTGTTCCTGT

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               81-259, gnl|bosTau2|chr18 (23029144-23028965)
               

               
               81-259, gnl|canFam2|chr2 (61200472-61200252)
               

               
               81-259, gnl|echTel1|scaffold_187832 (5963-5748)
               

               
               81-259, gnl|hg17|chr16 (56882349-56882571)
               

               
               81-259, gnl|Hg17|chr16 (56882548-56882363)
               

               
               81-259, gnl|loxAfr1|scaffold_8201 (22054-21838)
               

               
               81-259, gnl|mm7|chr8 (94159938-94160152)
               

               
               81-259, gnl|Mm7|chr8 (94160131-94159952)
               

               
               81-259, gnl|monDom2|scaffold_63 (7945968-7946196)
               

               
               81-259, gnl|panTro1|chr18_random (32477603-32477381)
               

               
               81-259, gnl|rheMac2|chr20 (56641321-56641543)
               

               
               81-259, gnl|rn3|chr19 (9947720-9947508)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               81-259, gnl|bosTau2|chr18 (23029144-23028965)
               

               
               81-259, gnl|canFam2|chr2 (61200472-61200252)
               

               
               81-259, gnl|echTel1|scaffold_187832 (5963-5748)
               

               
               81-259, gnl|hg17|chr16 (56882349-56882571)
               

               
               81-259, gnl|Hg17|chr16 (56882548-56882363)
               

               
               81-259, gnl|loxAfr1|scaffold_8201 (22054-21838)
               

               
               81-259, gnl|mm7|chr8 (94159938-94160152)
               

               
               81-259, gnl|Mm7|chr8 (94160131-94159952)
               

               
               81-259, gnl|monDom2|scaffold_63 (7945968-7946196)
               

               
               81-259, gnl|panTro1|chr18_random (32477603-32477381)
               

               
               81-259, gnl|rheMac2|chr20 (56641321-56641543)
               

               
               81-259, gnl|rn3|chr19 (9947720-9947508)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eru (0.120048)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)

	81-259, gnl\|bosTau2\|chr18 (23029144-23028965)
	81-259, gnl\|canFam2\|chr2 (61200472-61200252)
	81-259, gnl\|echTel1\|scaffold_187832 (5963-5748)
	81-259, gnl\|hg17\|chr16 (56882349-56882571)
	81-259, gnl\|Hg17\|chr16 (56882548-56882363)
	81-259, gnl\|loxAfr1\|scaffold_8201 (22054-21838)
	81-259, gnl\|mm7\|chr8 (94159938-94160152)
	81-259, gnl\|Mm7\|chr8 (94160131-94159952)
	81-259, gnl\|monDom2\|scaffold_63 (7945968-7946196)
	81-259, gnl\|panTro1\|chr18_random (32477603-32477381)
	81-259, gnl\|rheMac2\|chr20 (56641321-56641543)
	81-259, gnl\|rn3\|chr19 (9947720-9947508)