Non-Coding RNA Search

Ss1.1-Pig2-137C24.5

Sequence:


               
               GGGAGGGTGAGGTGGGCCTTAGAGACAGCCAGGGTCCGCGTGGTATGACCTGTCTTTACC
TGGCCCTAACTATTGCATCTATCTGTGCACCCCCACCTCCCCTTCCATGCACACTTCTGT
TGTGTTCATTGGTCTCTGTCCTGGGCTGGGAGCAGGAGGTAAGGCTGGCCTCGGATACCC
CATTTCTGTCTCACTCTAGCCCTAGATCCCGGAGGCTGCTTCCCAGGAAGACTCTTTAAG
GAAGCAAGTTTAGGAGGATAGCGTGGCTGCACGTGTATGGTGGGGACAGCTGCGCAGAAT
GTGTGCATGCCTGGGGCTGTCAGGGTGTGTGTCTGCATCTCTGTGTTGGGCCTGTCCCTC
TAGATGTCTGTGGGGTCCATGGTGGGACAGTGACTGTGTGGCCTGTTGAACAGCGTGAGA
GGCTACTCAGCAGTGCTGTGGATTGAGAGTCCTGGACGGGGGTCTGGAGCCTGGATTCTG
GTCCCGCCTGTGGCACTCTCCGTTATCTCCGCCTAGCCACTTACATTCCCTGACCTTCAC
TTTTTGCCACTGTACAATGAGCAGCATCTGAAATTATTTTCAAGGCCCTTTCAAACCTGA
AGGAATTTCTCCATAAGGATTTCCGTGGAGGCAGATAGAGAGAGAGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAGGGTGAGGTGGGCCTTAGAGACAGCCAGGGTCCGCGTGGTATGACCTGTCTTTACC
TGGCCCTAACTATTGCATCTATCTGTGCACCCCCACCTCCCCTTCCATGCACACTTCTGT
TGTGTTCATTGGTCTCTGTCCTGGGCTGGGAGCAGGAGGTAAGGCTGGCCTCGGATACCC
CATTTCTGTCTCACTCTAGCCCTAGATCCCGGAGGCTGCTTCCCAGGAAGACTCTTTAAG
GAAGCAAGTTTAGGAGGATAGCGTGGCTGCACGTGTATGGTGGGGACAGCTGCGCAGAAT
GTGTGCATGCCTGGGGCTGTCAGGGTGTGTGTCTGCATCTCTGTGTTGGGCCTGTCCCTC
TAGATGTCTGTGGGGTCCATGGTGGGACAGTGACTGTGTGGCCTGTTGAACAGCGTGAGA
GGCTACTCAGCAGTGCTGTGGATTGAGAGTCCTGGACGGGGGTCTGGAGCCTGGATTCTG
GTCCCGCCTGTGGCACTCTCCGTTATCTCCGCCTAGCCACTTACATTCCCTGACCTTCAC
TTTTTGCCACTGTACAATGAGCAGCATCTGAAATTATTTTCAAGGCCCTTTCAAACCTGA
AGGAATTTCTCCATAAGGATTTCCGTGGAGGCAGATAGAGAGAGAGAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               2-114, - strand, RNAz p=0.897356

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-114, - strand, RNAz p=0.897356

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               2-111, + strand, RNAmicro p=0.912359

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               2-111, + strand, RNAmicro p=0.912359

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               2-642, gnl|bosTau2|chr8 (41175891-41175256)
               

               
               2-642, gnl|canFam2|chr11 (54124330-54125168)
               

               
               2-642, gnl|dasNov1|scaffold_12758 (4676-3734)
               

               
               2-642, gnl|echTel1|scaffold_324167 (47386-46659)
               

               
               2-642, gnl|hg17|chr9 (34389528-34390420)
               

               
               2-642, gnl|Hg17|chr9 (34390314-34389626)
               

               
               2-642, gnl|loxAfr1|scaffold_20850 (37376-36505)
               

               
               2-642, gnl|mm7|chr4 (41657304-41658154)
               

               
               2-642, gnl|Mm7|chr4 (41658059-41657362)
               

               
               2-642, gnl|oryCun1|scaffold_117837 (4533-3773)
               

               
               2-642, gnl|panTro1|chr11 (34926387-34927277)
               

               
               2-642, gnl|rheMac2|chr15 (43118612-43117727)
               

               
               2-642, gnl|rn3|chr5 (58939510-58940322)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-642, gnl|bosTau2|chr8 (41175891-41175256)
               

               
               2-642, gnl|canFam2|chr11 (54124330-54125168)
               

               
               2-642, gnl|dasNov1|scaffold_12758 (4676-3734)
               

               
               2-642, gnl|echTel1|scaffold_324167 (47386-46659)
               

               
               2-642, gnl|hg17|chr9 (34389528-34390420)
               

               
               2-642, gnl|Hg17|chr9 (34390314-34389626)
               

               
               2-642, gnl|loxAfr1|scaffold_20850 (37376-36505)
               

               
               2-642, gnl|mm7|chr4 (41657304-41658154)
               

               
               2-642, gnl|Mm7|chr4 (41658059-41657362)
               

               
               2-642, gnl|oryCun1|scaffold_117837 (4533-3773)
               

               
               2-642, gnl|panTro1|chr11 (34926387-34927277)
               

               
               2-642, gnl|rheMac2|chr15 (43118612-43117727)
               

               
               2-642, gnl|rn3|chr5 (58939510-58940322)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nco (0.161734)
               

               
               ebs (0.118301)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)
               

               
               ebs (0.118301)

	2-642, gnl\|bosTau2\|chr8 (41175891-41175256)
	2-642, gnl\|canFam2\|chr11 (54124330-54125168)
	2-642, gnl\|dasNov1\|scaffold_12758 (4676-3734)
	2-642, gnl\|echTel1\|scaffold_324167 (47386-46659)
	2-642, gnl\|hg17\|chr9 (34389528-34390420)
	2-642, gnl\|Hg17\|chr9 (34390314-34389626)
	2-642, gnl\|loxAfr1\|scaffold_20850 (37376-36505)
	2-642, gnl\|mm7\|chr4 (41657304-41658154)
	2-642, gnl\|Mm7\|chr4 (41658059-41657362)
	2-642, gnl\|oryCun1\|scaffold_117837 (4533-3773)
	2-642, gnl\|panTro1\|chr11 (34926387-34927277)
	2-642, gnl\|rheMac2\|chr15 (43118612-43117727)
	2-642, gnl\|rn3\|chr5 (58939510-58940322)