Non-Coding RNA Search

Ss1.1-Pig2-139B10.5

Sequence:


               
               CGTCCCTGCCGCGCGTGTTCAAGCTCTTCCGGGCCCTGGGACTCCGGCACCTCGTGGTGG
TGGACAACCGCAATCAGGTGGTCGGACTGGTGACCAGGAAGGACCTGGCCAGGTACCGGC
TCGGGAAGGGGGGCCTGGAGGAACTCTCTCTGGCTCAGACATGAGGCCCTGGCCTCAGCA
CCTCTTCTGGGCGCCCGCCTCGCTCCCCAGGCGGCAGCGGATCCAGTGTTCTCCAGATCT
TGGGGACGGCCCGGCCTGCCCTCTGACACCCATGGGTTCCTGGCATTCATGGTGCCCTTC
CCCCCAAGCCCCTTGGATGCCACGCGCCAGGCTCCCGTTTTCTCACTACCAGGAGTCAGT
TGTGCAGCTTCTGCTCTCTCCTGGGGAGTGTGTCTGCACGTGTGCACGCCTTGCACGTGT
GTTTAGCAGCTGGCGTGCTGGGCCCTGTGGGTCCGAGTCCATGGCCCCCTGCGCAGGGCG
CGTAGCCTTGGAGGACCATGCTTTGAGGACCACCAGCTGGAGCCGGGGTGACTGGAGGCA
GAGACACGAGCCGGATTGGGAGCCGGACTGCCTGGAGGACAGACCCCAGACTCAGCACGT
GCACCCCGGGCCCCCCCTGCGGGGTGGTAGGGCTCTGCATTGGGGTCCCAGCCAAGGGGC
AGAGCTGGGACTCTCCCATGGGTCTGGACCCTGCGTCCAGCCACACTGTCCACACCCCAG
GGAGGCGGGGCTTCCCGCACATGGTTGTGCTCAGGGTCCCCCGACCCCGAGGGCTGATCT
GGGGCAGCTCTTCTTCCAGTGTTGGGGCAGGTGGTTTTGGGGATGAACTGGGGAGGCCAG
AGCAGGGGTCCACTCCTTCCAGGCTGGGTCATGGGGGAATCTTGTTTTCTAAAGTGACTC
CTGTCGCCATTCTGTTGCTCTGACAAGGGACACGATGCCTTTGCAGTGGTTGGGCGCTAC
ACCTCGGTTTTAGCCCTTTTTGAGGGGGTGGGCCTCCACTCCCTGGTGGGGAGCTCTCCG
CGGGGGGCGCCAGGGGCCAAGTGTGGGGTCTGAATGGGAGAAATAAAGGAATTGTACCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTCCCTGCCGCGCGTGTTCAAGCTCTTCCGGGCCCTGGGACTCCGGCACCTCGTGGTGG
TGGACAACCGCAATCAGGTGGTCGGACTGGTGACCAGGAAGGACCTGGCCAGGTACCGGC
TCGGGAAGGGGGGCCTGGAGGAACTCTCTCTGGCTCAGACATGAGGCCCTGGCCTCAGCA
CCTCTTCTGGGCGCCCGCCTCGCTCCCCAGGCGGCAGCGGATCCAGTGTTCTCCAGATCT
TGGGGACGGCCCGGCCTGCCCTCTGACACCCATGGGTTCCTGGCATTCATGGTGCCCTTC
CCCCCAAGCCCCTTGGATGCCACGCGCCAGGCTCCCGTTTTCTCACTACCAGGAGTCAGT
TGTGCAGCTTCTGCTCTCTCCTGGGGAGTGTGTCTGCACGTGTGCACGCCTTGCACGTGT
GTTTAGCAGCTGGCGTGCTGGGCCCTGTGGGTCCGAGTCCATGGCCCCCTGCGCAGGGCG
CGTAGCCTTGGAGGACCATGCTTTGAGGACCACCAGCTGGAGCCGGGGTGACTGGAGGCA
GAGACACGAGCCGGATTGGGAGCCGGACTGCCTGGAGGACAGACCCCAGACTCAGCACGT
GCACCCCGGGCCCCCCCTGCGGGGTGGTAGGGCTCTGCATTGGGGTCCCAGCCAAGGGGC
AGAGCTGGGACTCTCCCATGGGTCTGGACCCTGCGTCCAGCCACACTGTCCACACCCCAG
GGAGGCGGGGCTTCCCGCACATGGTTGTGCTCAGGGTCCCCCGACCCCGAGGGCTGATCT
GGGGCAGCTCTTCTTCCAGTGTTGGGGCAGGTGGTTTTGGGGATGAACTGGGGAGGCCAG
AGCAGGGGTCCACTCCTTCCAGGCTGGGTCATGGGGGAATCTTGTTTTCTAAAGTGACTC
CTGTCGCCATTCTGTTGCTCTGACAAGGGACACGATGCCTTTGCAGTGGTTGGGCGCTAC
ACCTCGGTTTTAGCCCTTTTTGAGGGGGTGGGCCTCCACTCCCTGGTGGGGAGCTCTCCG
CGGGGGGCGCCAGGGGCCAAGTGTGGGGTCTGAATGGGAGAAATAAAGGAATTGTACCCA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|1857982|gb|AAB48530.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|1857982|gb|AAB48530.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               74-171, + strand, RNAz p=0.518616

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               74-171, + strand, RNAz p=0.518616

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of NM_001287, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_001287, +

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               74-517, gnl|bosTau2|chr25 (3803903-3804334)
               

               
               74-517, gnl|Hg17|chr16 (1436723-1436197)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               74-517, gnl|bosTau2|chr25 (3803903-3804334)
               

               
               74-517, gnl|Hg17|chr16 (1436723-1436197)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               ute (0.265569)
               

               
               hyp (0.142837)
               

               
               eru (0.120048)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ute (0.265569)
               

               
               hyp (0.142837)
               

               
               eru (0.120048)

	74-517, gnl\|bosTau2\|chr25 (3803903-3804334)
	74-517, gnl\|Hg17\|chr16 (1436723-1436197)