Non-Coding RNA Search

Ss1.1-Pig2-139C22.5

Sequence:


               
               AGCATTGTATCCTAAATTTATCATTTAAAATAGTATCAGTAATTTTCGAGCCCATGTCAG
GCATTGAGCAGTTAGAGATTTTATAGGGAAGACTAAGTTAATCCAGTTCCCAAGAACCCC
AGCTGAATGAGGCTTCAAGAGTCAGACCAACAAAAGTTTTATTCTGTGTTTACTGGTAAG
AATATTATCTTGATACTACCTCTCAAGGGTATTATTAGAAAATGCCACTTATGGTTAACG
AGATAGATACAAATAGTTATATTTGACAGAAGCTTGAAACTCTGGCATCTATCTGCCCAA
CAATGGGGGCTTTCACTCGCTGTAATTTAATACTTTGTAGATACATTATTTGTGTGTAAT
TTTATAAGTGTTCATATTTTTCTCATTTTGCATTGTGTAAAGTGTACAATATCTCAAAGT
ATAAAATACTGCTTATATTGCTTGTAATTACAGTGTGTAAATATTTTCTAATCGTGTACA
TTGACGGGGGGACAAGTGGGATATTCAGGTTTTTTTTTTTAAGTGACCCTTTTGTATTGC
AGTTTCAACAGATAACTGCCCATCAAATTTAAAACCACTTTGATACAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCATTGTATCCTAAATTTATCATTTAAAATAGTATCAGTAATTTTCGAGCCCATGTCAG
GCATTGAGCAGTTAGAGATTTTATAGGGAAGACTAAGTTAATCCAGTTCCCAAGAACCCC
AGCTGAATGAGGCTTCAAGAGTCAGACCAACAAAAGTTTTATTCTGTGTTTACTGGTAAG
AATATTATCTTGATACTACCTCTCAAGGGTATTATTAGAAAATGCCACTTATGGTTAACG
AGATAGATACAAATAGTTATATTTGACAGAAGCTTGAAACTCTGGCATCTATCTGCCCAA
CAATGGGGGCTTTCACTCGCTGTAATTTAATACTTTGTAGATACATTATTTGTGTGTAAT
TTTATAAGTGTTCATATTTTTCTCATTTTGCATTGTGTAAAGTGTACAATATCTCAAAGT
ATAAAATACTGCTTATATTGCTTGTAATTACAGTGTGTAAATATTTTCTAATCGTGTACA
TTGACGGGGGGACAAGTGGGATATTCAGGTTTTTTTTTTTAAGTGACCCTTTTGTATTGC
AGTTTCAACAGATAACTGCCCATCAAATTTAAAACCACTTTGATACAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               189-346, + strand, RNAz p=0.859189

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               189-346, + strand, RNAz p=0.859189

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AF460991, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AF460991, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-566, gnl|bosTau2|chr26 (13370627-13371197)
               

               
               1-566, gnl|Hg17|chr10 (102713015-102713586)
               

               
               1-566, gnl|Mm7|chr19 (44875808-44876361)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-566, gnl|bosTau2|chr26 (13370627-13371197)
               

               
               1-566, gnl|Hg17|chr10 (102713015-102713586)
               

               
               1-566, gnl|Mm7|chr19 (44875808-44876361)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fty (0.17584)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               cty (0.10408)

	1-566, gnl\|bosTau2\|chr26 (13370627-13371197)
	1-566, gnl\|Hg17\|chr10 (102713015-102713586)
	1-566, gnl\|Mm7\|chr19 (44875808-44876361)