Non-Coding RNA Search

Ss1.1-Pig2-139L09.5

Sequence:


               
               ATCACTTGAGCCTGTCCATCTCACAAGGGCAGGGAGATGCCCTGCCTAGGTCTGAAGGAC
CTGCTGTACCTGCTGCTCCCAGTGGCAGAGTGAGGCTAAGGCAGCAGGAGGCTGGGAACC
CTGCCTTGCCTGTCCCTTCCTCACCTGGCGCTGTCCCTACAACCTCAGAGCCCTCAGTGC
CCCCCTGCTGAGGTACAAGAAGGAGCCTCTAGAAGGCAGGCCTGGGGGCAGCCTCAGCAG
ACCCTGCAGCTGACCTGCCTCTGGCTTCAGTCCCTGGTGGGGCCTGTGGCTGGAGTATGT
CACCAAGCCCTGCTGGCGAGGACGCCAGGCTTGATCCGGGGCAAGAAGGATGTGTTGGCC
ACACAGAAAAGTGGGCCAGTACCAGGCCCAGGGCTGGGCCTTTTCCAGGGAGCCCCTGGC
AGGCAGAGGGGTTGTCAGACAGAATGTGACTTGTGGCCTAACTATGGACATGGTATGGGA
TTGGTATGGCTGGTTTTAGGATCTTGTGCCTGGAGATAGCCTGAGGTGGCTCAGGTAACA
GAGAAAGGGTGCCAGATCATTCTCTGGCAGGGACCAGGGCCCAAGGCCCCAGGGTTGGAA
GGAGACCAAGGGGGCAGCTGCCCCAGAGGGACACCAGTGCTTCCTCTTGACCCAGCTTTT
CCCCTGTGCTGTTACATGTTTTCCCACCAGTCTTTGTCGCCAAAGTTGCTGCCCCAGCCA
TGAATATCTGCTTCTCCCAGAGAAATAAAGTTAGTTTCTATTTTATGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCACTTGAGCCTGTCCATCTCACAAGGGCAGGGAGATGCCCTGCCTAGGTCTGAAGGAC
CTGCTGTACCTGCTGCTCCCAGTGGCAGAGTGAGGCTAAGGCAGCAGGAGGCTGGGAACC
CTGCCTTGCCTGTCCCTTCCTCACCTGGCGCTGTCCCTACAACCTCAGAGCCCTCAGTGC
CCCCCTGCTGAGGTACAAGAAGGAGCCTCTAGAAGGCAGGCCTGGGGGCAGCCTCAGCAG
ACCCTGCAGCTGACCTGCCTCTGGCTTCAGTCCCTGGTGGGGCCTGTGGCTGGAGTATGT
CACCAAGCCCTGCTGGCGAGGACGCCAGGCTTGATCCGGGGCAAGAAGGATGTGTTGGCC
ACACAGAAAAGTGGGCCAGTACCAGGCCCAGGGCTGGGCCTTTTCCAGGGAGCCCCTGGC
AGGCAGAGGGGTTGTCAGACAGAATGTGACTTGTGGCCTAACTATGGACATGGTATGGGA
TTGGTATGGCTGGTTTTAGGATCTTGTGCCTGGAGATAGCCTGAGGTGGCTCAGGTAACA
GAGAAAGGGTGCCAGATCATTCTCTGGCAGGGACCAGGGCCCAAGGCCCCAGGGTTGGAA
GGAGACCAAGGGGGCAGCTGCCCCAGAGGGACACCAGTGCTTCCTCTTGACCCAGCTTTT
CCCCTGTGCTGTTACATGTTTTCCCACCAGTCTTTGTCGCCAAAGTTGCTGCCCCAGCCA
TGAATATCTGCTTCTCCCAGAGAAATAAAGTTAGTTTCTATTTTATGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               452-649, + strand, RNAz p=0.991567

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               452-649, + strand, RNAz p=0.991567

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of NM_001010938, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_001010938, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               452-768, gnl|bosTau2|chr12 (865631-865944)
               

               
               452-768, gnl|Hg17|chr3 (197078853-197078547)
               

               
               452-768, gnl|Mm7|chr16 (32357725-32358015)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               452-768, gnl|bosTau2|chr12 (865631-865944)
               

               
               452-768, gnl|Hg17|chr3 (197078853-197078547)
               

               
               452-768, gnl|Mm7|chr16 (32357725-32358015)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

Help | Less info


               
               ill (0.175593)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ute (0.132784)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ute (0.132784)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)

	452-768, gnl\|bosTau2\|chr12 (865631-865944)
	452-768, gnl\|Hg17\|chr3 (197078853-197078547)
	452-768, gnl\|Mm7\|chr16 (32357725-32358015)

	ill (0.175593)
	fhi (0.169578)
	hyp (0.142837)
	hlv (0.139256)
	che (0.136314)
	ute (0.132784)
	cly (0.120642)
	ebs (0.118301)