Non-Coding RNA Search

Ss1.1-Pig2-139O05.5

Sequence:


               
               GCACAGGTATCTGCACTTGTGGCATTCCAGGAGTCCTTCAGCCTCTGACTGGTAATATTC
CACTTCCTCTAGCCCAGGCCCAGGGTTCGAGAGCTGATATCTCCCTGAAGTGCGTTCACT
TTCTGGTCCGCGGCGTTCAAGGCCCCCCTTCCGCGAGGATGGTGGCTTCGGGGTTTCCCA
AGGCGCGGGCCAGGGTGGCGGGGCTGGGTCCCAAGTCGGCTGCCGGGGTCCGTCCCGCGT
CCGACTTGGGCGAGATTTTTCTGGGACTCTTTGTTCACTTCCACGATGGTCCCCAGCCCT
GTGTCTGTCCTGGTGGGAGTGTCGGTCCCTTTCCCTGTCGCGGTCCCTCTTTTCCCTGTC
GCGGTCCCTGTCCCTTCGCTCTCCCCCGTTTCTCTCCCTTCGTGGGTCCCCAGCTCTGTC
CCACTGTCGCTCGGGGTGGCGATCTCGGTCCGGGCGAGGGTGCCGGTCTGGATCCCGCTC
TCTCGGCCGAGTCCGGGGCTCTCGAGTCCCCGACGTGCGTTCCATGGCCGAGTTCCGCGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCACAGGTATCTGCACTTGTGGCATTCCAGGAGTCCTTCAGCCTCTGACTGGTAATATTC
CACTTCCTCTAGCCCAGGCCCAGGGTTCGAGAGCTGATATCTCCCTGAAGTGCGTTCACT
TTCTGGTCCGCGGCGTTCAAGGCCCCCCTTCCGCGAGGATGGTGGCTTCGGGGTTTCCCA
AGGCGCGGGCCAGGGTGGCGGGGCTGGGTCCCAAGTCGGCTGCCGGGGTCCGTCCCGCGT
CCGACTTGGGCGAGATTTTTCTGGGACTCTTTGTTCACTTCCACGATGGTCCCCAGCCCT
GTGTCTGTCCTGGTGGGAGTGTCGGTCCCTTTCCCTGTCGCGGTCCCTCTTTTCCCTGTC
GCGGTCCCTGTCCCTTCGCTCTCCCCCGTTTCTCTCCCTTCGTGGGTCCCCAGCTCTGTC
CCACTGTCGCTCGGGGTGGCGATCTCGGTCCGGGCGAGGGTGCCGGTCTGGATCCCGCTC
TCTCGGCCGAGTCCGGGGCTCTCGAGTCCCCGACGTGCGTTCCATGGCCGAGTTCCGCGT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               119-540, gnl|bosTau2|chr18 (32587402-32587802)
               

               
               119-540, gnl|Hg17|chr16 (70218100-70217619)
               

               
               119-540, gnl|Mm7|chr8 (108561890-108562253)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               119-540, gnl|bosTau2|chr18 (32587402-32587802)
               

               
               119-540, gnl|Hg17|chr16 (70218100-70217619)
               

               
               119-540, gnl|Mm7|chr8 (108561890-108562253)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eje (0.0988338)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eje (0.0988338)

	119-540, gnl\|bosTau2\|chr18 (32587402-32587802)
	119-540, gnl\|Hg17\|chr16 (70218100-70217619)
	119-540, gnl\|Mm7\|chr8 (108561890-108562253)