Non-Coding RNA Search

Ss1.1-Pig2-139O15.5

Sequence:


               
               AACTAAATGCCTCTAACGTTGTGAGTGTCCGGCCCTTGCCCTGGAATCTCAGAGCCCAGC
CTCACCCCCTCTTAGGAGAGGCGGCGGGCTTTGCCAGCCCACTCTAGCACCCTGACCCGC
CCACCAAAGCCTGAGAACCCCATCTAGGTTCCTGGGTGCAGCTGATGGGGTTTGGGGATT
AGAAGTAACCCCACTGGGTCTCCCAGATGCCTTGGTGCTCCCGGCTATGGGCCTCTGGGG
CAGGGAAGTGAGCCACCTGCCTAGATCCAGGTGGCCCCAGCCCTGGAGGGCCCCCAAGGA
GCAGGGCCCACAGTGGCTCTGCTGCCCTTGGGCCAGGCCTGCCTGAGGCCACGCTGCTAC
GGAGGCTGCCTCCTAGTCTCCCACCAGGTCCCAGGCCGTTGAAGTCCCCAGCCCAGGGCT
GGTCAGAACTCGGGCAGATTCCACTGCCCCTTCTGCCAAACATATCCAGAACCTGCCCCC
AGCCCTGGAAGCCAGCACCTTGTGGGGCCAGGGGCTTGCTCCCTCCCTCCCCACCCCCAT
TGCCCGCAGCACCCATGGTGCCCAGGCACCCCACCAGCAGAACTGAGCCTGCCTCATTCT
CCCCTGCCTGCCCCGCTGCCCACAGGACCCCACGCCTCTCTCCCAGGCAGGAGGTCCCCA
CGCCAGCCTTGCCGGGTGGTGGCAAGAGGCAGACACCTCCAGACCAGCGTTTGGCAGGGC
CTGCAGTGGCCGGCTCGGCCCTCTGGAGCCCTTCCCGCTCGCCTCCCGCTCTGCCCCCAG
GCTTCCCTTGGAAACCTCTGTGCTGTGTTTCAGAGAAGTGTGAGCCACAAACTGTATCTC
AGAACACCCCGTGGTCCTCCCTCGGCGTCACTCCGAGTTGCTTCTCGTGGGACCGACGGC
GGTGAGAAGGCCCCTCTGGGACAAGGGGCCTGGGAGCAGAGCCGACTCTGCAGGTGGCCC
TTGAGGAGTGGCTTTTCTTCTCCCTCCTTCCCTGGGCCTGTGGCTGCCTCCAGACAGGAC
AGGCTGGATGAGTCACCCAGGGGAGAGGAACCTGGCCTTTTTCCCCTGGGGCCTTCCCCT
CCCAGCCCTGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACTAAATGCCTCTAACGTTGTGAGTGTCCGGCCCTTGCCCTGGAATCTCAGAGCCCAGC
CTCACCCCCTCTTAGGAGAGGCGGCGGGCTTTGCCAGCCCACTCTAGCACCCTGACCCGC
CCACCAAAGCCTGAGAACCCCATCTAGGTTCCTGGGTGCAGCTGATGGGGTTTGGGGATT
AGAAGTAACCCCACTGGGTCTCCCAGATGCCTTGGTGCTCCCGGCTATGGGCCTCTGGGG
CAGGGAAGTGAGCCACCTGCCTAGATCCAGGTGGCCCCAGCCCTGGAGGGCCCCCAAGGA
GCAGGGCCCACAGTGGCTCTGCTGCCCTTGGGCCAGGCCTGCCTGAGGCCACGCTGCTAC
GGAGGCTGCCTCCTAGTCTCCCACCAGGTCCCAGGCCGTTGAAGTCCCCAGCCCAGGGCT
GGTCAGAACTCGGGCAGATTCCACTGCCCCTTCTGCCAAACATATCCAGAACCTGCCCCC
AGCCCTGGAAGCCAGCACCTTGTGGGGCCAGGGGCTTGCTCCCTCCCTCCCCACCCCCAT
TGCCCGCAGCACCCATGGTGCCCAGGCACCCCACCAGCAGAACTGAGCCTGCCTCATTCT
CCCCTGCCTGCCCCGCTGCCCACAGGACCCCACGCCTCTCTCCCAGGCAGGAGGTCCCCA
CGCCAGCCTTGCCGGGTGGTGGCAAGAGGCAGACACCTCCAGACCAGCGTTTGGCAGGGC
CTGCAGTGGCCGGCTCGGCCCTCTGGAGCCCTTCCCGCTCGCCTCCCGCTCTGCCCCCAG
GCTTCCCTTGGAAACCTCTGTGCTGTGTTTCAGAGAAGTGTGAGCCACAAACTGTATCTC
AGAACACCCCGTGGTCCTCCCTCGGCGTCACTCCGAGTTGCTTCTCGTGGGACCGACGGC
GGTGAGAAGGCCCCTCTGGGACAAGGGGCCTGGGAGCAGAGCCGACTCTGCAGGTGGCCC
TTGAGGAGTGGCTTTTCTTCTCCCTCCTTCCCTGGGCCTGTGGCTGCCTCCAGACAGGAC
AGGCTGGATGAGTCACCCAGGGGAGAGGAACCTGGCCTTTTTCCCCTGGGGCCTTCCCCT
CCCAGCCCTGGG

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               24-447, + strand, RNAz p=0.997268
               

               
               117-561, - strand, RNAz p=0.99965
               

               
               592-708, - strand, RNAz p=0.943877

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               24-447, + strand, RNAz p=0.997268
               

               
               117-561, - strand, RNAz p=0.99965
               

               
               592-708, - strand, RNAz p=0.943877

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               224-333, - strand, RNAmicro p=0.999908
               

               
               225-389, + strand, RNAmicro p=0.999541

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               224-333, - strand, RNAmicro p=0.999908
               

               
               225-389, + strand, RNAmicro p=0.999541

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               2-708, gnl|bosTau2|chr11 (78524648-78523928)
               

               
               2-708, gnl|canFam2|chr9 (58217062-58215997)
               

               
               2-708, gnl|dasNov1|scaffold_8128 (14804-13780)
               

               
               2-708, gnl|echTel1|scaffold_158591 (9703-8762)
               

               
               2-708, gnl|hg17|chr9 (128571982-128572926)
               

               
               2-708, gnl|Hg17|chr9 (128572836-128572147)
               

               
               2-708, gnl|loxAfr1|scaffold_60837 (5254-6270)
               

               
               2-708, gnl|mm7|chr2 (30104923-30105872)
               

               
               2-708, gnl|Mm7|chr2 (30105790-30105109)
               

               
               2-708, gnl|monDom2|scaffold_51 (3302123-3303013)
               

               
               2-708, gnl|oryCun1|scaffold_126306 (9252-8412)
               

               
               2-708, gnl|panTro1|chr11 (113410789-113411735)
               

               
               2-708, gnl|rheMac2|chr15 (10131223-10130276)
               

               
               2-708, gnl|rn3|chr3 (9103136-9104055)
               


               
               763-1002, gnl|bosTau2|chr11 (78523918-78523668)
               

               
               763-1002, gnl|Hg17|chr9 (128572137-128571918)
               

               
               763-1002, gnl|Mm7|chr2 (30105094-30104868)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-708, gnl|bosTau2|chr11 (78524648-78523928)
               

               
               2-708, gnl|canFam2|chr9 (58217062-58215997)
               

               
               2-708, gnl|dasNov1|scaffold_8128 (14804-13780)
               

               
               2-708, gnl|echTel1|scaffold_158591 (9703-8762)
               

               
               2-708, gnl|hg17|chr9 (128571982-128572926)
               

               
               2-708, gnl|Hg17|chr9 (128572836-128572147)
               

               
               2-708, gnl|loxAfr1|scaffold_60837 (5254-6270)
               

               
               2-708, gnl|mm7|chr2 (30104923-30105872)
               

               
               2-708, gnl|Mm7|chr2 (30105790-30105109)
               

               
               2-708, gnl|monDom2|scaffold_51 (3302123-3303013)
               

               
               2-708, gnl|oryCun1|scaffold_126306 (9252-8412)
               

               
               2-708, gnl|panTro1|chr11 (113410789-113411735)
               

               
               2-708, gnl|rheMac2|chr15 (10131223-10130276)
               

               
               2-708, gnl|rn3|chr3 (9103136-9104055)
               


               
               763-1002, gnl|bosTau2|chr11 (78523918-78523668)
               

               
               763-1002, gnl|Hg17|chr9 (128572137-128571918)
               

               
               763-1002, gnl|Mm7|chr2 (30105094-30104868)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ton (0.1755)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.1755)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

	24-447, + strand, RNAz p=0.997268
	117-561, - strand, RNAz p=0.99965
	592-708, - strand, RNAz p=0.943877

	224-333, - strand, RNAmicro p=0.999908
	225-389, + strand, RNAmicro p=0.999541

	2-708, gnl\|bosTau2\|chr11 (78524648-78523928)
	2-708, gnl\|canFam2\|chr9 (58217062-58215997)
	2-708, gnl\|dasNov1\|scaffold_8128 (14804-13780)
	2-708, gnl\|echTel1\|scaffold_158591 (9703-8762)
	2-708, gnl\|hg17\|chr9 (128571982-128572926)
	2-708, gnl\|Hg17\|chr9 (128572836-128572147)
	2-708, gnl\|loxAfr1\|scaffold_60837 (5254-6270)
	2-708, gnl\|mm7\|chr2 (30104923-30105872)
	2-708, gnl\|Mm7\|chr2 (30105790-30105109)
	2-708, gnl\|monDom2\|scaffold_51 (3302123-3303013)
	2-708, gnl\|oryCun1\|scaffold_126306 (9252-8412)
	2-708, gnl\|panTro1\|chr11 (113410789-113411735)
	2-708, gnl\|rheMac2\|chr15 (10131223-10130276)
	2-708, gnl\|rn3\|chr3 (9103136-9104055)

	763-1002, gnl\|bosTau2\|chr11 (78523918-78523668)
	763-1002, gnl\|Hg17\|chr9 (128572137-128571918)
	763-1002, gnl\|Mm7\|chr2 (30105094-30104868)