Non-Coding RNA Search

Ss1.1-Pig2-13K05.5

Sequence:


               
               ATTGATGGACAGCTGGTTTTGGGCAATCGCATGACCTCCACCAATTTGGCTTTGGTGTTT
GGATCTGCTCTCCTGAAGAGGGGGCAGTCTGCCAAGAGGGAGTCCAGGAAGACAAGACTG
GGCATTGACCACTATGTTGCTTCTGTCAATGTGGTCCGTGCCATGATCGATAACTGGGAT
GTGCTCTTCCAGGTGCCTCCCCATATTCAGAGGCAGGTGGCTAAGCGTGTGTGGAAATCC
AGTCCCGAAGCCCTTGATTTTATCAGACGCAGGAATTTGAGGAGGATCCAGAGTGCACGG
ATAAAGATGGAAGAGGATGCTTTACTTTCTGATCCAGTGGAAAACTCTGCTGAAGTCCGG
GCTGCTGTCCTTGCTCAAAGCAAGCCCTTTGATGAAGATTCCTCTGAGGAGCCAGCTGTG
CCTCCCGGCACTGCCCGTTCCCATGACGATGAGGAAGGAGCGGGTAACCCCCCCATTCCG
GAGCAAGACCGCCCATTGCTCCGTGTGCCCCGGGCGAAGGAGGCCCAAACTGGCATCGGC
TACTTCTTTCCTTAGATGTTTTCCCTTCTGTCTCGTGCCGGACAGGGGAAAAGGGTGGGG
GTAGACCTGGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTGATGGACAGCTGGTTTTGGGCAATCGCATGACCTCCACCAATTTGGCTTTGGTGTTT
GGATCTGCTCTCCTGAAGAGGGGGCAGTCTGCCAAGAGGGAGTCCAGGAAGACAAGACTG
GGCATTGACCACTATGTTGCTTCTGTCAATGTGGTCCGTGCCATGATCGATAACTGGGAT
GTGCTCTTCCAGGTGCCTCCCCATATTCAGAGGCAGGTGGCTAAGCGTGTGTGGAAATCC
AGTCCCGAAGCCCTTGATTTTATCAGACGCAGGAATTTGAGGAGGATCCAGAGTGCACGG
ATAAAGATGGAAGAGGATGCTTTACTTTCTGATCCAGTGGAAAACTCTGCTGAAGTCCGG
GCTGCTGTCCTTGCTCAAAGCAAGCCCTTTGATGAAGATTCCTCTGAGGAGCCAGCTGTG
CCTCCCGGCACTGCCCGTTCCCATGACGATGAGGAAGGAGCGGGTAACCCCCCCATTCCG
GAGCAAGACCGCCCATTGCTCCGTGTGCCCCGGGCGAAGGAGGCCCAAACTGGCATCGGC
TACTTCTTTCCTTAGATGTTTTCCCTTCTGTCTCGTGCCGGACAGGGGAAAAGGGTGGGG
GTAGACCTGGGA

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               15-194, gnl|bosTau2|chr15 (20986539-20986718)
               

               
               15-194, gnl|Hg17|chrX (129945421-129945600)
               

               
               15-194, gnl|Mm7|chrX (44589626-44589805)
               


               
               396-612, gnl|bosTau2|chr15 (20989426-20989641)
               

               
               396-612, gnl|Hg17|chrX (129948135-129948351)
               

               
               396-612, gnl|Mm7|chrX (44591240-44591450)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-194, gnl|bosTau2|chr15 (20986539-20986718)
               

               
               15-194, gnl|Hg17|chrX (129945421-129945600)
               

               
               15-194, gnl|Mm7|chrX (44589626-44589805)
               


               
               396-612, gnl|bosTau2|chr15 (20989426-20989641)
               

               
               396-612, gnl|Hg17|chrX (129948135-129948351)
               

               
               396-612, gnl|Mm7|chrX (44591240-44591450)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eje (0.0988338)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eje (0.0988338)

	15-194, gnl\|bosTau2\|chr15 (20986539-20986718)
	15-194, gnl\|Hg17\|chrX (129945421-129945600)
	15-194, gnl\|Mm7\|chrX (44589626-44589805)

	396-612, gnl\|bosTau2\|chr15 (20989426-20989641)
	396-612, gnl\|Hg17\|chrX (129948135-129948351)
	396-612, gnl\|Mm7\|chrX (44591240-44591450)