Ss1.1-Pig2-141G02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAGGGTCAGCTGGGACGAGGTACTGGGCAGTGGGAGTCGCAGAGTCGAAGCCATGATCC CCCCGCAGGAGGCGTCCGCCCGGCGGCGGGAGATCGAGGACAAGCTGAAGCAGGAGGAGG AGACGCTGTCCTTCATCCGAGACAGTCTGGAGAAGAGCGACCAGCTCACCAAGAACATGG TGTCTATCCTGTCGTCCTTTGAGAGTCGCCTCATGAAGCTGGAGAATTCCATCATCCCCG TGCACAAACAGACGGAGAACCTGCAGCGGCTGCAGGAGAATGTTGAGAAGACGCTGTCCT GTCTGGACCACGTCATTAGCTACTACCATGTGGCCAGTGACACTGAGAGGATCATCAGGG AGGGCCCCACAGGGAGGCTGGAGGAATACCTGGGAAGCATGGCCAAGATTCAGAAGGCTG TGGAGTATTTCCAGGACAACAGCCCAGACAGCCCAGAGCTCAACAAAGTGAAGCTGCTGT TTGAACGGGGGAAGGAGTCGCTGGAGTCTGAGTTCCGCAGCCTGATGACCCGGCACAGCA AGGTCGTGTCGCCCGTGCTCATCCTGGATCTGATCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAGGGTCAGCTGGGACGAGGTACTGGGCAGTGGGAGTCGCAGAGTCGAAGCCATGATCC CCCCGCAGGAGGCGTCCGCCCGGCGGCGGGAGATCGAGGACAAGCTGAAGCAGGAGGAGG AGACGCTGTCCTTCATCCGAGACAGTCTGGAGAAGAGCGACCAGCTCACCAAGAACATGG TGTCTATCCTGTCGTCCTTTGAGAGTCGCCTCATGAAGCTGGAGAATTCCATCATCCCCG TGCACAAACAGACGGAGAACCTGCAGCGGCTGCAGGAGAATGTTGAGAAGACGCTGTCCT GTCTGGACCACGTCATTAGCTACTACCATGTGGCCAGTGACACTGAGAGGATCATCAGGG AGGGCCCCACAGGGAGGCTGGAGGAATACCTGGGAAGCATGGCCAAGATTCAGAAGGCTG TGGAGTATTTCCAGGACAACAGCCCAGACAGCCCAGAGCTCAACAAAGTGAAGCTGCTGT TTGAACGGGGGAAGGAGTCGCTGGAGTCTGAGTTCCGCAGCCTGATGACCCGGCACAGCA AGGTCGTGTCGCCCGTGCTCATCCTGGATCTGATCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 247-364, + strand, RNAz p=0.728275 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 247-364, + strand, RNAz p=0.728275 |
| Aligned organism(s): 56 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
| 1-117, gnl|bosTau2|chr19 (49488485-49488609) | |
| 1-117, gnl|Hg17|chr17 (71611422-71611305) | |
| 1-117, gnl|Mm7|chr11 (116415771-116415655) | |
| 179-364, gnl|bosTau2|chr19 (49490215-49490400) | |
| 179-364, gnl|canFam2|chr9 (7537720-7537525) | |
| 179-364, gnl|canFam2|chr9 (7537715-7537535) | |
| 179-364, gnl|danRer3|chr7 (24527671-24527477) | |
| 179-364, gnl|danRer3|chr7 (24527662-24527482) | |
| 179-364, gnl|dasNov1|scaffold_96818 (439-244) | |
| 179-364, gnl|dasNov1|scaffold_96818 (434-254) | |
| 179-364, gnl|echTel1|scaffold_285491 (4053-3858) | |
| 179-364, gnl|echTel1|scaffold_285491 (4048-3868) | |
| 179-364, gnl|fr1|chrUn (297734969-297735165) | |
| 179-364, gnl|fr1|chrUn (297734975-297735155) | |
| 179-364, gnl|galGal2|chr18 (4325409-4325221) | |
| 179-364, gnl|galGal2|chr18 (4325408-4325228) | |
| 179-364, gnl|hg17|chr17 (71609348-71609547) | |
| 179-364, gnl|Hg17|chr17 (71609540-71609355) | |
| 179-364, gnl|hg17|chr4 (109698215-109698395) | |
| 179-364, gnl|loxAfr1|scaffold_33325 (32383-32188) | |
| 179-364, gnl|loxAfr1|scaffold_33325 (32378-32198) | |
| 179-364, gnl|mm7|chr11 (116413894-116414098) | |
| 179-364, gnl|mm7|chr11 (116413911-116414091) | |
| 179-364, gnl|Mm7|chr11 (116414094-116413909) | |
| 179-364, gnl|monDom2|scaffold_18 (34005706-34005905) | |
| 179-364, gnl|monDom2|scaffold_18 (34005711-34005891) | |
| 179-364, gnl|oryCun1|scaffold_77682 (176-4) | |
| 179-364, gnl|oryCun1|scaffold_77682 (175-4) | |
| 179-364, gnl|panTro1|chr19 (74972537-74972736) | |
| 179-364, gnl|panTro1|chr3 (126184064-126184244) | |
| 179-364, gnl|rheMac2|chr16 (71445687-71445886) | |
| 179-364, gnl|rheMac2|chr5 (101349747-101349927) | |
| 179-364, gnl|rn3|chr10 (106432441-106432648) | |
| 179-364, gnl|rn3|chr10 (106432458-106432638) | |
| 179-364, gnl|tetNig1|chr2 (1872390-1872196) | |
| 179-364, gnl|tetNig1|chr2 (1872385-1872205) | |
| 179-364, gnl|xenTro1|scaffold_135 (2072168-2071980) | |
| 179-364, gnl|xenTro1|scaffold_135 (2072167-2071987) | |
| 366-470, gnl|bosTau2|chr19 (49490579-49490683) | |
| 366-470, gnl|canFam2|chr9 (7538010-7537887) | |
| 366-470, gnl|danRer3|chr7 (24530109-24529987) | |
| 366-470, gnl|dasNov1|scaffold_96818 (714-591) | |
| 366-470, gnl|echTel1|scaffold_285491 (4319-4196) | |
| 366-470, gnl|fr1|chrUn (297734790-297734911) | |
| 366-470, gnl|galGal2|chr18 (4326097-4325982) | |
| 366-470, gnl|hg17|chr17 (71608943-71609066) | |
| 366-470, gnl|Hg17|chr17 (71609051-71608947) | |
| 366-470, gnl|mm7|chr11 (116413618-116413741) | |
| 366-470, gnl|Mm7|chr11 (116413726-116413622) | |
| 366-470, gnl|monDom2|scaffold_18 (34005360-34005478) | |
| 366-470, gnl|oryCun1|scaffold_77682 (282-177) | |
| 366-470, gnl|panTro1|chr19 (74972132-74972255) | |
| 366-470, gnl|rheMac2|chr16 (71445284-71445407) | |
| 366-470, gnl|rn3|chr10 (106432149-106432272) | |
| 366-470, gnl|tetNig1|chr2 (1872563-1872450) | |
| 366-470, gnl|xenTro1|scaffold_135 (2072425-2072309) |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-117, gnl|bosTau2|chr19 (49488485-49488609) | |
| 1-117, gnl|Hg17|chr17 (71611422-71611305) | |
| 1-117, gnl|Mm7|chr11 (116415771-116415655) | |
| 179-364, gnl|bosTau2|chr19 (49490215-49490400) | |
| 179-364, gnl|canFam2|chr9 (7537720-7537525) | |
| 179-364, gnl|canFam2|chr9 (7537715-7537535) | |
| 179-364, gnl|danRer3|chr7 (24527671-24527477) | |
| 179-364, gnl|danRer3|chr7 (24527662-24527482) | |
| 179-364, gnl|dasNov1|scaffold_96818 (439-244) | |
| 179-364, gnl|dasNov1|scaffold_96818 (434-254) | |
| 179-364, gnl|echTel1|scaffold_285491 (4053-3858) | |
| 179-364, gnl|echTel1|scaffold_285491 (4048-3868) | |
| 179-364, gnl|fr1|chrUn (297734969-297735165) | |
| 179-364, gnl|fr1|chrUn (297734975-297735155) | |
| 179-364, gnl|galGal2|chr18 (4325409-4325221) | |
| 179-364, gnl|galGal2|chr18 (4325408-4325228) | |
| 179-364, gnl|hg17|chr17 (71609348-71609547) | |
| 179-364, gnl|Hg17|chr17 (71609540-71609355) | |
| 179-364, gnl|hg17|chr4 (109698215-109698395) | |
| 179-364, gnl|loxAfr1|scaffold_33325 (32383-32188) | |
| 179-364, gnl|loxAfr1|scaffold_33325 (32378-32198) | |
| 179-364, gnl|mm7|chr11 (116413894-116414098) | |
| 179-364, gnl|mm7|chr11 (116413911-116414091) | |
| 179-364, gnl|Mm7|chr11 (116414094-116413909) | |
| 179-364, gnl|monDom2|scaffold_18 (34005706-34005905) | |
| 179-364, gnl|monDom2|scaffold_18 (34005711-34005891) | |
| 179-364, gnl|oryCun1|scaffold_77682 (176-4) | |
| 179-364, gnl|oryCun1|scaffold_77682 (175-4) | |
| 179-364, gnl|panTro1|chr19 (74972537-74972736) | |
| 179-364, gnl|panTro1|chr3 (126184064-126184244) | |
| 179-364, gnl|rheMac2|chr16 (71445687-71445886) | |
| 179-364, gnl|rheMac2|chr5 (101349747-101349927) | |
| 179-364, gnl|rn3|chr10 (106432441-106432648) | |
| 179-364, gnl|rn3|chr10 (106432458-106432638) | |
| 179-364, gnl|tetNig1|chr2 (1872390-1872196) | |
| 179-364, gnl|tetNig1|chr2 (1872385-1872205) | |
| 179-364, gnl|xenTro1|scaffold_135 (2072168-2071980) | |
| 179-364, gnl|xenTro1|scaffold_135 (2072167-2071987) | |
| 366-470, gnl|bosTau2|chr19 (49490579-49490683) | |
| 366-470, gnl|canFam2|chr9 (7538010-7537887) | |
| 366-470, gnl|danRer3|chr7 (24530109-24529987) | |
| 366-470, gnl|dasNov1|scaffold_96818 (714-591) | |
| 366-470, gnl|echTel1|scaffold_285491 (4319-4196) | |
| 366-470, gnl|fr1|chrUn (297734790-297734911) | |
| 366-470, gnl|galGal2|chr18 (4326097-4325982) | |
| 366-470, gnl|hg17|chr17 (71608943-71609066) | |
| 366-470, gnl|Hg17|chr17 (71609051-71608947) | |
| 366-470, gnl|mm7|chr11 (116413618-116413741) | |
| 366-470, gnl|Mm7|chr11 (116413726-116413622) | |
| 366-470, gnl|monDom2|scaffold_18 (34005360-34005478) | |
| 366-470, gnl|oryCun1|scaffold_77682 (282-177) | |
| 366-470, gnl|panTro1|chr19 (74972132-74972255) | |
| 366-470, gnl|rheMac2|chr16 (71445284-71445407) | |
| 366-470, gnl|rn3|chr10 (106432149-106432272) | |
| 366-470, gnl|tetNig1|chr2 (1872563-1872450) | |
| 366-470, gnl|xenTro1|scaffold_135 (2072425-2072309) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nco (0.161734) |