Non-Coding RNA Search

Ss1.1-Pig2-141H03.5

Sequence:


               
               GGTGGAGATTCCTTAATTTATTCTAAAGGGGAAGGGCTACGGGGGCCTTGGAGGAAGAGG
TGGTCTGGAGCTGAGGATAAAGGAATCCCTGGGGAGAAAGGATGGCACTTGGAAGAAGGG
GACTTTAGAATCTTCTGGTCTCCTGAGGAGTTTAAGATCGAGAGCTCCCAGCTCCTTTCA
GCCCCTAGGGCAGAGGTGGGATCTCCTTAGCCGCCTCTGCTCTTTCCCGCCACTCTCTTG
CCCTGGGGTGGCGGTGTGGATGTGGGGTGGAGCTGAACGCAGTAGCCCCGCGGGGCGCCC
TGACCATCTCCATCTTTCTCCGCCTCCACCCTTAAACCTCGGCGGGTTCCGCCCAGAGTC
TGGTGCGGGCTTTGGGAAGGCAGACCCTTGGGATGGAGATGGCATTGGGGGTGGGGAAGG
AGGGGAAGGACTCGGCTGGAGGGAACTTGTGCGGGCCCCGGCCGACCCGGCTCCGGGCCA
GAGGCAATAAATAAACCCGGTCCTGCCAGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGGAGATTCCTTAATTTATTCTAAAGGGGAAGGGCTACGGGGGCCTTGGAGGAAGAGG
TGGTCTGGAGCTGAGGATAAAGGAATCCCTGGGGAGAAAGGATGGCACTTGGAAGAAGGG
GACTTTAGAATCTTCTGGTCTCCTGAGGAGTTTAAGATCGAGAGCTCCCAGCTCCTTTCA
GCCCCTAGGGCAGAGGTGGGATCTCCTTAGCCGCCTCTGCTCTTTCCCGCCACTCTCTTG
CCCTGGGGTGGCGGTGTGGATGTGGGGTGGAGCTGAACGCAGTAGCCCCGCGGGGCGCCC
TGACCATCTCCATCTTTCTCCGCCTCCACCCTTAAACCTCGGCGGGTTCCGCCCAGAGTC
TGGTGCGGGCTTTGGGAAGGCAGACCCTTGGGATGGAGATGGCATTGGGGGTGGGGAAGG
AGGGGAAGGACTCGGCTGGAGGGAACTTGTGCGGGCCCCGGCCGACCCGGCTCCGGGCCA
GAGGCAATAAATAAACCCGGTCCTGCCAGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               44-215, - strand, RNAz p=0.999963
               

               
               108-207, - strand, RNAz p=0.951317

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               44-215, - strand, RNAz p=0.999963
               

               
               108-207, - strand, RNAz p=0.951317

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               5-215, gnl|bosTau2|chr10 (45012714-45012932)
               

               
               5-215, gnl|canFam2|chr30 (14581591-14581867)
               

               
               5-215, gnl|dasNov1|scaffold_1076 (143385-143674)
               

               
               5-215, gnl|echTel1|scaffold_217274 (2787-2465)
               

               
               5-215, gnl|hg17|chr15 (43247039-43247348)
               

               
               5-215, gnl|Hg17|chr15 (43247309-43247100)
               

               
               5-215, gnl|loxAfr1|scaffold_54266 (7167-6862)
               

               
               5-215, gnl|mm7|chr2 (122089905-122090122)
               

               
               5-215, gnl|monDom2|scaffold_53 (8831985-8831579)
               

               
               5-215, gnl|panTro1|chr16 (43193754-43194063)
               

               
               5-215, gnl|rheMac2|chr7 (23520395-23520704)
               

               
               5-215, gnl|rn3|chr3 (109035115-109035328)
               


               
               367-512, gnl|bosTau2|chr10 (45013027-45013173)
               

               
               367-512, gnl|Hg17|chr15 (43246993-43246823)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-215, gnl|bosTau2|chr10 (45012714-45012932)
               

               
               5-215, gnl|canFam2|chr30 (14581591-14581867)
               

               
               5-215, gnl|dasNov1|scaffold_1076 (143385-143674)
               

               
               5-215, gnl|echTel1|scaffold_217274 (2787-2465)
               

               
               5-215, gnl|hg17|chr15 (43247039-43247348)
               

               
               5-215, gnl|Hg17|chr15 (43247309-43247100)
               

               
               5-215, gnl|loxAfr1|scaffold_54266 (7167-6862)
               

               
               5-215, gnl|mm7|chr2 (122089905-122090122)
               

               
               5-215, gnl|monDom2|scaffold_53 (8831985-8831579)
               

               
               5-215, gnl|panTro1|chr16 (43193754-43194063)
               

               
               5-215, gnl|rheMac2|chr7 (23520395-23520704)
               

               
               5-215, gnl|rn3|chr3 (109035115-109035328)
               


               
               367-512, gnl|bosTau2|chr10 (45013027-45013173)
               

               
               367-512, gnl|Hg17|chr15 (43246993-43246823)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               ece (0.45861)
               

               
               fce (0.271592)
               

               
               hlv (0.139256)
               

               
               cov (0.132153)
               

               
               ecc (0.115035)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.45861)
               

               
               fce (0.271592)
               

               
               hlv (0.139256)
               

               
               cov (0.132153)
               

               
               ecc (0.115035)

	44-215, - strand, RNAz p=0.999963
	108-207, - strand, RNAz p=0.951317

	5-215, gnl\|bosTau2\|chr10 (45012714-45012932)
	5-215, gnl\|canFam2\|chr30 (14581591-14581867)
	5-215, gnl\|dasNov1\|scaffold_1076 (143385-143674)
	5-215, gnl\|echTel1\|scaffold_217274 (2787-2465)
	5-215, gnl\|hg17\|chr15 (43247039-43247348)
	5-215, gnl\|Hg17\|chr15 (43247309-43247100)
	5-215, gnl\|loxAfr1\|scaffold_54266 (7167-6862)
	5-215, gnl\|mm7\|chr2 (122089905-122090122)
	5-215, gnl\|monDom2\|scaffold_53 (8831985-8831579)
	5-215, gnl\|panTro1\|chr16 (43193754-43194063)
	5-215, gnl\|rheMac2\|chr7 (23520395-23520704)
	5-215, gnl\|rn3\|chr3 (109035115-109035328)

	367-512, gnl\|bosTau2\|chr10 (45013027-45013173)
	367-512, gnl\|Hg17\|chr15 (43246993-43246823)

	ece (0.45861)
	fce (0.271592)
	hlv (0.139256)
	cov (0.132153)
	ecc (0.115035)