Ss1.1-Pig2-141I02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATCATGCCACCTGGCTCTGCCTCCCTGCCTGAGACTCCTCGACTGGTCCCTCTGCTTCCT GTGAGAACACCAGGCCTCGGTCCCATGAACTCCCAGCCGCCAGCCCCTCCTGTCAGCCTC CCTGCAGCACACCCCTCAGGAGGCCCAGGCGCTCCATGTGCTAGCGCCCCACCAGCCACC GACCTCTTGACCCCTCAGCCAGGGCCTCAAGATTCCTTGAAAAATGCTCCAGTGCCCAGG GGAAGCCTTCAGAGGAAAAAGTTGCCAGAGACATTTATGCCCCCAGCACCAATTACTGCT CCAGTTATGTGCCTCACCCCTGAGCCACGAGGGCTCCTTTCCTCACAGCCAGCTGTCCCC AGTGTGAGTCAGGCTCCCTCTGGAGCCCCAGGAGAACTCGGCCTGCAGCGGCTTCAGCAG CCACCTGAGAAGATGGACATGAAGGAGCTGCCCCCCGAACATGAGTCCTTGAAGATCAGC TTCGAGGCACTTCTGCAACGCTGCTCCCTTTCTGCCACTGACTTAAAGACAAAACGGAAG CTGGATGAGGCAGCCCAACGCCTAGAATGTCTGTATGAGAAGCTCCGTGAGAGGACACTC TCGCCTCCTGTCCTGACTGGGCTCCACGAGGTTGCCCGATGTGCGGACACAGGAAGCTTT GAGCAGGGCCTCGCCGTGCATGCCCAGGTGGTGGGCTACAGCAGCTTCAGCGAGGTCTCC AGCTTCATGCCTGCCCTCAAGTCTATCCTCACCATTGCTCTTAAGCTGCACATCTGAACT AGCAGCTCCTCCTGCCAGGAGGCCACTTCGACTGTTCCTTAACTCCTGCCTTCAGGGGAG GAGAATAGATTCCGTTTGTTTTTCCCTTGCTGCGGGTGTATGATGCTGTAGGCTTGGCTC CAAACCAGCAGAATGCCTGTTCTCCACCCCTTAATACCTGGCCCTCTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATCATGCCACCTGGCTCTGCCTCCCTGCCTGAGACTCCTCGACTGGTCCCTCTGCTTCCT GTGAGAACACCAGGCCTCGGTCCCATGAACTCCCAGCCGCCAGCCCCTCCTGTCAGCCTC CCTGCAGCACACCCCTCAGGAGGCCCAGGCGCTCCATGTGCTAGCGCCCCACCAGCCACC GACCTCTTGACCCCTCAGCCAGGGCCTCAAGATTCCTTGAAAAATGCTCCAGTGCCCAGG GGAAGCCTTCAGAGGAAAAAGTTGCCAGAGACATTTATGCCCCCAGCACCAATTACTGCT CCAGTTATGTGCCTCACCCCTGAGCCACGAGGGCTCCTTTCCTCACAGCCAGCTGTCCCC AGTGTGAGTCAGGCTCCCTCTGGAGCCCCAGGAGAACTCGGCCTGCAGCGGCTTCAGCAG CCACCTGAGAAGATGGACATGAAGGAGCTGCCCCCCGAACATGAGTCCTTGAAGATCAGC TTCGAGGCACTTCTGCAACGCTGCTCCCTTTCTGCCACTGACTTAAAGACAAAACGGAAG CTGGATGAGGCAGCCCAACGCCTAGAATGTCTGTATGAGAAGCTCCGTGAGAGGACACTC TCGCCTCCTGTCCTGACTGGGCTCCACGAGGTTGCCCGATGTGCGGACACAGGAAGCTTT GAGCAGGGCCTCGCCGTGCATGCCCAGGTGGTGGGCTACAGCAGCTTCAGCGAGGTCTCC AGCTTCATGCCTGCCCTCAAGTCTATCCTCACCATTGCTCTTAAGCTGCACATCTGAACT AGCAGCTCCTCCTGCCAGGAGGCCACTTCGACTGTTCCTTAACTCCTGCCTTCAGGGGAG GAGAATAGATTCCGTTTGTTTTTCCCTTGCTGCGGGTGTATGATGCTGTAGGCTTGGCTC CAAACCAGCAGAATGCCTGTTCTCCACCCCTTAATACCTGGCCCTCTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 5 entry(ies) | More info |
| Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
| 75-203, + strand, RNAz p=0.809232 | |
| 260-408, + strand, RNAz p=0.99917 | |
| 260-408, - strand, RNAz p=0.99917 | |
| 260-408, + strand, RNAz p=0.997797 | |
| 260-408, - strand, RNAz p=0.997797 |
| Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 75-203, + strand, RNAz p=0.809232 | |
| 260-408, + strand, RNAz p=0.99917 | |
| 260-408, - strand, RNAz p=0.99917 | |
| 260-408, + strand, RNAz p=0.997797 | |
| 260-408, - strand, RNAz p=0.997797 |
| Aligned organism(s): 48 entry(ies) | More info |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
| 1-203, gnl|bosTau2|chr26 (12974316-12974518) | |
| 1-203, gnl|canFam2|chr28 (16213550-16213749) | |
| 1-203, gnl|echTel1|scaffold_107702 (168-326) | |
| 1-203, gnl|fr1|chrUn (35963511-35963716) | |
| 1-203, gnl|hg17|chr10 (102239754-102239953) | |
| 1-203, gnl|Hg17|chr10 (102239956-102239754) | |
| 1-203, gnl|mm7|chr19 (44413045-44413244) | |
| 1-203, gnl|Mm7|chr19 (44413247-44413045) | |
| 1-203, gnl|monDom2|scaffold_45 (455178-454972) | |
| 1-203, gnl|oryCun1|scaffold_160237 (3775-3575) | |
| 1-203, gnl|panTro1|chr8 (103977111-103977310) | |
| 1-203, gnl|rheMac2|chr9 (100092632-100092831) | |
| 1-203, gnl|rn3|chr1 (249829695-249829894) | |
| 260-408, gnl|bosTau2|chr26 (12975103-12975251) | |
| 260-408, gnl|canFam2|chr28 (16212767-16212921) | |
| 260-408, gnl|danRer3|chr23 (19687291-19687163) | |
| 260-408, gnl|galGal2|chr6 (16627309-16627155) | |
| 260-408, gnl|hg17|chr10 (102238993-102239147) | |
| 260-408, gnl|Hg17|chr10 (102239147-102238999) | |
| 260-408, gnl|loxAfr1|scaffold_965 (137645-137497) | |
| 260-408, gnl|mm7|chr19 (44412385-44412539) | |
| 260-408, gnl|Mm7|chr19 (44412539-44412391) | |
| 260-408, gnl|monDom2|scaffold_45 (455844-455690) | |
| 260-408, gnl|oryCun1|scaffold_160237 (4449-4295) | |
| 260-408, gnl|panTro1|chr8 (103976348-103976502) | |
| 260-408, gnl|rheMac2|chr9 (100091871-100092025) | |
| 260-408, gnl|rn3|chr1 (249829015-249829172) | |
| 260-408, gnl|xenTro1|scaffold_186 (950259-950410) | |
| 414-525, gnl|bosTau2|chr26 (12975547-12975658) | |
| 414-525, gnl|canFam2|chr28 (16212326-16212482) | |
| 414-525, gnl|echTel1|scaffold_322670 (33422-33276) | |
| 414-525, gnl|fr1|chrUn (20216402-20216252) | |
| 414-525, gnl|galGal2|chr6 (16627818-16627645) | |
| 414-525, gnl|hg17|chr10 (102238598-102238754) | |
| 414-525, gnl|Hg17|chr10 (102238719-102238605) | |
| 414-525, gnl|loxAfr1|scaffold_965 (138054-137898) | |
| 414-525, gnl|mm7|chr19 (44412010-44412162) | |
| 414-525, gnl|Mm7|chr19 (44412128-44412017) | |
| 414-525, gnl|monDom2|scaffold_45 (456227-456070) | |
| 414-525, gnl|oryCun1|scaffold_160237 (4845-4693) | |
| 414-525, gnl|panTro1|chr8 (103975953-103976109) | |
| 414-525, gnl|rheMac2|chr9 (100091465-100091621) | |
| 414-525, gnl|rn3|chr1 (249828683-249828833) | |
| 414-525, gnl|tetNig1|chr2_random (1246041-1246172) | |
| 414-525, gnl|xenTro1|scaffold_186 (949260-949416) | |
| 598-948, gnl|bosTau2|chr26 (12976428-12976796) | |
| 598-948, gnl|Hg17|chr10 (102237542-102237171) | |
| 598-948, gnl|Mm7|chr19 (44411361-44410986) |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-203, gnl|bosTau2|chr26 (12974316-12974518) | |
| 1-203, gnl|canFam2|chr28 (16213550-16213749) | |
| 1-203, gnl|echTel1|scaffold_107702 (168-326) | |
| 1-203, gnl|fr1|chrUn (35963511-35963716) | |
| 1-203, gnl|hg17|chr10 (102239754-102239953) | |
| 1-203, gnl|Hg17|chr10 (102239956-102239754) | |
| 1-203, gnl|mm7|chr19 (44413045-44413244) | |
| 1-203, gnl|Mm7|chr19 (44413247-44413045) | |
| 1-203, gnl|monDom2|scaffold_45 (455178-454972) | |
| 1-203, gnl|oryCun1|scaffold_160237 (3775-3575) | |
| 1-203, gnl|panTro1|chr8 (103977111-103977310) | |
| 1-203, gnl|rheMac2|chr9 (100092632-100092831) | |
| 1-203, gnl|rn3|chr1 (249829695-249829894) | |
| 260-408, gnl|bosTau2|chr26 (12975103-12975251) | |
| 260-408, gnl|canFam2|chr28 (16212767-16212921) | |
| 260-408, gnl|danRer3|chr23 (19687291-19687163) | |
| 260-408, gnl|galGal2|chr6 (16627309-16627155) | |
| 260-408, gnl|hg17|chr10 (102238993-102239147) | |
| 260-408, gnl|Hg17|chr10 (102239147-102238999) | |
| 260-408, gnl|loxAfr1|scaffold_965 (137645-137497) | |
| 260-408, gnl|mm7|chr19 (44412385-44412539) | |
| 260-408, gnl|Mm7|chr19 (44412539-44412391) | |
| 260-408, gnl|monDom2|scaffold_45 (455844-455690) | |
| 260-408, gnl|oryCun1|scaffold_160237 (4449-4295) | |
| 260-408, gnl|panTro1|chr8 (103976348-103976502) | |
| 260-408, gnl|rheMac2|chr9 (100091871-100092025) | |
| 260-408, gnl|rn3|chr1 (249829015-249829172) | |
| 260-408, gnl|xenTro1|scaffold_186 (950259-950410) | |
| 414-525, gnl|bosTau2|chr26 (12975547-12975658) | |
| 414-525, gnl|canFam2|chr28 (16212326-16212482) | |
| 414-525, gnl|echTel1|scaffold_322670 (33422-33276) | |
| 414-525, gnl|fr1|chrUn (20216402-20216252) | |
| 414-525, gnl|galGal2|chr6 (16627818-16627645) | |
| 414-525, gnl|hg17|chr10 (102238598-102238754) | |
| 414-525, gnl|Hg17|chr10 (102238719-102238605) | |
| 414-525, gnl|loxAfr1|scaffold_965 (138054-137898) | |
| 414-525, gnl|mm7|chr19 (44412010-44412162) | |
| 414-525, gnl|Mm7|chr19 (44412128-44412017) | |
| 414-525, gnl|monDom2|scaffold_45 (456227-456070) | |
| 414-525, gnl|oryCun1|scaffold_160237 (4845-4693) | |
| 414-525, gnl|panTro1|chr8 (103975953-103976109) | |
| 414-525, gnl|rheMac2|chr9 (100091465-100091621) | |
| 414-525, gnl|rn3|chr1 (249828683-249828833) | |
| 414-525, gnl|tetNig1|chr2_random (1246041-1246172) | |
| 414-525, gnl|xenTro1|scaffold_186 (949260-949416) | |
| 598-948, gnl|bosTau2|chr26 (12976428-12976796) | |
| 598-948, gnl|Hg17|chr10 (102237542-102237171) | |
| 598-948, gnl|Mm7|chr19 (44411361-44410986) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ton (0.1755) |