Non-Coding RNA Search

Ss1.1-Pig2-141L19.5

Sequence:


               
               TTTTTTTTTTTTTTTTAGAAACCATTCCTTTCTTTATTAAACATAGCTTGCAAGTGATAA
ATATTACAAAGTTTTTTTCTTTTAATCCTTTCTCCAAAAATTAGCTTATTATTTGAATCT
GTCACTGCTGAAATGCTCAGCAGCATCTGAAACAGATGGGAGTGTATTTGCCTTTTTGAA
AACCAGTTTCTATTGGTCTTAGTTTTTTCATTTTAACTCAGACCGCCAGACCGGAGAGCT
AGAATGAGTTTAAAAAAAAAAAAAGCCTCAGACGCTGGAGGTGGACGTGGACATGTCGGA
ATACCTGGATCGCTCCTTCCAGGCCAACCACGTGTCGCAGGGGAATGGGCAGCTTTTCAA
AATGCCGTGTGCATGGCGTTGTGAGTCTGAGCTAGCTGGGGAAGAAGTGCCATGGAATGT
GTCTGAAGTGATTGTGTTCGGCCTCCTATATTGTTATATTCAGGCCTTGATATGAAGTAG
TTTGGGTCCTGCTGAGGGTCAAATCATACTCCTTTGCCTGTGGCAGGGACAGGGGGGCGG
AAGGGGGTCCTGCCATCACCCAGCACGTTCTCGTCTGTATTCCCCTCTGTGACACGCCTG
CCAGCCTTCTTGTTGGAGAGCCACGGCGGGGCCTGGACCCCCACACAGATTCTTCCAGAA
CAAGGAACCAGTGTTCAAGTGTAGATTCTGCCTGAATGAATGCCCTTGGGAGAAATCATA
TCTCGAAACGTAACCCGGTATTATAACTGAAGAAATAAAGTCTGTTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTAGAAACCATTCCTTTCTTTATTAAACATAGCTTGCAAGTGATAA
ATATTACAAAGTTTTTTTCTTTTAATCCTTTCTCCAAAAATTAGCTTATTATTTGAATCT
GTCACTGCTGAAATGCTCAGCAGCATCTGAAACAGATGGGAGTGTATTTGCCTTTTTGAA
AACCAGTTTCTATTGGTCTTAGTTTTTTCATTTTAACTCAGACCGCCAGACCGGAGAGCT
AGAATGAGTTTAAAAAAAAAAAAAGCCTCAGACGCTGGAGGTGGACGTGGACATGTCGGA
ATACCTGGATCGCTCCTTCCAGGCCAACCACGTGTCGCAGGGGAATGGGCAGCTTTTCAA
AATGCCGTGTGCATGGCGTTGTGAGTCTGAGCTAGCTGGGGAAGAAGTGCCATGGAATGT
GTCTGAAGTGATTGTGTTCGGCCTCCTATATTGTTATATTCAGGCCTTGATATGAAGTAG
TTTGGGTCCTGCTGAGGGTCAAATCATACTCCTTTGCCTGTGGCAGGGACAGGGGGGCGG
AAGGGGGTCCTGCCATCACCCAGCACGTTCTCGTCTGTATTCCCCTCTGTGACACGCCTG
CCAGCCTTCTTGTTGGAGAGCCACGGCGGGGCCTGGACCCCCACACAGATTCTTCCAGAA
CAAGGAACCAGTGTTCAAGTGTAGATTCTGCCTGAATGAATGCCCTTGGGAGAAATCATA
TCTCGAAACGTAACCCGGTATTATAACTGAAGAAATAAAGTCTGTTGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               90-205, + strand, RNAz p=0.939975

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               90-205, + strand, RNAz p=0.939975

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               14-251, gnl|bosTau2|chr3 (8026962-8027200)
               

               
               14-251, gnl|Hg17|chr1 (150590274-150590513)
               

               
               14-251, gnl|Mm7|chr3 (90494139-90493897)
               


               
               338-767, gnl|bosTau2|chr6 (54281682-54281281)
               

               
               338-767, gnl|Hg17|chr2 (112661582-112662014)
               

               
               338-767, gnl|Mm7|chr2 (128636713-128637121)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-251, gnl|bosTau2|chr3 (8026962-8027200)
               

               
               14-251, gnl|Hg17|chr1 (150590274-150590513)
               

               
               14-251, gnl|Mm7|chr3 (90494139-90493897)
               


               
               338-767, gnl|bosTau2|chr6 (54281682-54281281)
               

               
               338-767, gnl|Hg17|chr2 (112661582-112662014)
               

               
               338-767, gnl|Mm7|chr2 (128636713-128637121)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               amn (0.835422)
               

               
               hyp (0.142837)
               

               
               jca (0.11396)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.835422)
               

               
               hyp (0.142837)
               

               
               jca (0.11396)

	14-251, gnl\|bosTau2\|chr3 (8026962-8027200)
	14-251, gnl\|Hg17\|chr1 (150590274-150590513)
	14-251, gnl\|Mm7\|chr3 (90494139-90493897)

	338-767, gnl\|bosTau2\|chr6 (54281682-54281281)
	338-767, gnl\|Hg17\|chr2 (112661582-112662014)
	338-767, gnl\|Mm7\|chr2 (128636713-128637121)