Ss1.1-Pig2-141P10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGAGGAAATGCTACTTCTTTTCTGAGGAACCGAGAGATTGGAACACGGGCAGGCAGTAC TGCCGCACCCACGACGCCGTGCTGGCTGTGATTCAGAGCCAGAAGGAGCTGGAATTCATG TTCAAGTTCACACGGAGAGAGCCCTGGATTGGCCTGCGCAGAGTTGGGGACGAATTCCAC TGGGTCAACGGGGACCCATTTGATCCAGACACGTTCTCCATCTCGGGCCCCGGGGAGTGC GTCTTCGTGGAGCCCACCAGGCTGGCGTCGACGGAGTGCCTGATGACCCGGCCCTGGGTG TGCAGCAAGACGGCCTACACGTGAGGTGGGTCCGGGCCCGGGCCGCCCTGCAGCCGGCTC CTCTCCAAGGCGCAGCAGTGAGGACGGGCCCTCGGCCTCTGGGCTCCTCGGCCCCGGGCA GGTCCCGCGGCTCAGTCGGCGCGTCCCACACGCTCAGCAGCACCGCGGACACCTGTTCCC CTGGATGCGCTGACACGTTCACGGGCATGGTCCTCGCTCATGTTCAGCGTCCCCCTTAGG CACCCCAACGCGTCCCTCCTTGGCCCCACGCTGGAACCTTCCCTCCTCTGGAGGCGCCGT GAGGAAGGCCGGGGGCTGATCCAGCCTGAGCTGCTGCCCGCACAGACCCCCGCCTCCTCC GCCACGGGGCGGGGGGGGGGGCAGGAAGGGAAGCCCCCTCCTTGCCTTGCTCTGCCCGGG GTCTCAGGCAGGCCCCTGCTGTGTCCCTGGTGCTGCTGTGTTGGTCCCCAATGGAATAAA AAGATGACTGGCAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGAGGAAATGCTACTTCTTTTCTGAGGAACCGAGAGATTGGAACACGGGCAGGCAGTAC TGCCGCACCCACGACGCCGTGCTGGCTGTGATTCAGAGCCAGAAGGAGCTGGAATTCATG TTCAAGTTCACACGGAGAGAGCCCTGGATTGGCCTGCGCAGAGTTGGGGACGAATTCCAC TGGGTCAACGGGGACCCATTTGATCCAGACACGTTCTCCATCTCGGGCCCCGGGGAGTGC GTCTTCGTGGAGCCCACCAGGCTGGCGTCGACGGAGTGCCTGATGACCCGGCCCTGGGTG TGCAGCAAGACGGCCTACACGTGAGGTGGGTCCGGGCCCGGGCCGCCCTGCAGCCGGCTC CTCTCCAAGGCGCAGCAGTGAGGACGGGCCCTCGGCCTCTGGGCTCCTCGGCCCCGGGCA GGTCCCGCGGCTCAGTCGGCGCGTCCCACACGCTCAGCAGCACCGCGGACACCTGTTCCC CTGGATGCGCTGACACGTTCACGGGCATGGTCCTCGCTCATGTTCAGCGTCCCCCTTAGG CACCCCAACGCGTCCCTCCTTGGCCCCACGCTGGAACCTTCCCTCCTCTGGAGGCGCCGT GAGGAAGGCCGGGGGCTGATCCAGCCTGAGCTGCTGCCCGCACAGACCCCCGCCTCCTCC GCCACGGGGCGGGGGGGGGGGCAGGAAGGGAAGCCCCCTCCTTGCCTTGCTCTGCCCGGG GTCTCAGGCAGGCCCCTGCTGTGTCCCTGGTGCTGCTGTGTTGGTCCCCAATGGAATAAA AAGATGACTGGCAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 248-361, + strand, RNAz p=0.671941 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 248-361, + strand, RNAz p=0.671941 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 1-112, gnl|bosTau2|chr4 (56631027-56631138) | |
| 1-112, gnl|canFam2|chr16 (12230890-12230695) | |
| 1-112, gnl|dasNov1|scaffold_26820 (47504-47698) | |
| 1-112, gnl|hg17|chr7 (138682305-138682500) | |
| 1-112, gnl|Hg17|chr7 (138682378-138682489) | |
| 1-112, gnl|mm7|chr6 (38607703-38607897) | |
| 1-112, gnl|Mm7|chr6 (38607778-38607889) | |
| 1-112, gnl|monDom2|scaffold_22 (2752676-2752481) | |
| 1-112, gnl|oryCun1|scaffold_100677 (5650-5454) | |
| 1-112, gnl|rheMac2|chr3 (177032058-177032253) | |
| 1-112, gnl|rn3|chr4 (66521417-66521610) | |
| 209-361, gnl|bosTau2|chr4 (56633748-56633901) | |
| 209-361, gnl|canFam2|chr16 (12227722-12227536) | |
| 209-361, gnl|dasNov1|scaffold_166882 (6635-6463) | |
| 209-361, gnl|echTel1|scaffold_192607 (4593-4417) | |
| 209-361, gnl|hg17|chr7 (138686216-138686428) | |
| 209-361, gnl|Hg17|chr7 (138686228-138686404) | |
| 209-361, gnl|mm7|chr6 (38611037-38611245) | |
| 209-361, gnl|Mm7|chr6 (38611049-38611220) | |
| 209-361, gnl|rheMac2|chr3 (177037169-177037374) | |
| 209-361, gnl|rn3|chr4 (66524075-66524283) | |
| 515-792, gnl|bosTau2|chr4 (56634134-56634443) | |
| 515-792, gnl|Hg17|chr7 (138686642-138686987) | |
| 515-792, gnl|Mm7|chr6 (38611463-38611783) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-112, gnl|bosTau2|chr4 (56631027-56631138) | |
| 1-112, gnl|canFam2|chr16 (12230890-12230695) | |
| 1-112, gnl|dasNov1|scaffold_26820 (47504-47698) | |
| 1-112, gnl|hg17|chr7 (138682305-138682500) | |
| 1-112, gnl|Hg17|chr7 (138682378-138682489) | |
| 1-112, gnl|mm7|chr6 (38607703-38607897) | |
| 1-112, gnl|Mm7|chr6 (38607778-38607889) | |
| 1-112, gnl|monDom2|scaffold_22 (2752676-2752481) | |
| 1-112, gnl|oryCun1|scaffold_100677 (5650-5454) | |
| 1-112, gnl|rheMac2|chr3 (177032058-177032253) | |
| 1-112, gnl|rn3|chr4 (66521417-66521610) | |
| 209-361, gnl|bosTau2|chr4 (56633748-56633901) | |
| 209-361, gnl|canFam2|chr16 (12227722-12227536) | |
| 209-361, gnl|dasNov1|scaffold_166882 (6635-6463) | |
| 209-361, gnl|echTel1|scaffold_192607 (4593-4417) | |
| 209-361, gnl|hg17|chr7 (138686216-138686428) | |
| 209-361, gnl|Hg17|chr7 (138686228-138686404) | |
| 209-361, gnl|mm7|chr6 (38611037-38611245) | |
| 209-361, gnl|Mm7|chr6 (38611049-38611220) | |
| 209-361, gnl|rheMac2|chr3 (177037169-177037374) | |
| 209-361, gnl|rn3|chr4 (66524075-66524283) | |
| 515-792, gnl|bosTau2|chr4 (56634134-56634443) | |
| 515-792, gnl|Hg17|chr7 (138686642-138686987) | |
| 515-792, gnl|Mm7|chr6 (38611463-38611783) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hyp (0.42851) | |
| ebs (0.354904) | |
| fcc (0.197785) |