Non-Coding RNA Search

Ss1.1-Pig2-141P14.5

Sequence:


               
               ACTCCAGCCAAGAAACCCGAGCCCTTTTCTTTGAAAGGTTCATATTCAAAGTCAAATAAA
TTGGATGAAAATCGGTACTGTCATTGACTATGCCTATAAATGGTCCTGACCCTTTCCCAC
CCTGTCCCTGCCCCCACTGATTCAACAAAGGCCAAGAAAGAGACGGGGAGAGGCAATGGT
GGATTTGCGTTGACAGGCTTTTGAAAAGGTGTTGTCATTTTGGCAACAGGGTATTCTACA
AGTGGGGCTCCAGCTGAAAGAGAATAGGTGCTAAGAGCTTTCAGGATCCTACAAAAGAAA
AACAGCTTCTCTTTGCTCTGCAGTGAAGGTGGCCTGAGAATGAAGCTTCTGTCTTTTGGG
GGATAATAGCTATATCAACTCGTACAAGAAAACCTCTGTCTCTTCAGCAGTGCTGTCCTG
CCCAGTGACACAAAAGGAAAGAGTCATCCATGCCTGTCAGAAGCAGGAATGGTAGATCCC
ATCTCCCCAGGCTGGAGCCTCTGTTGATAGAAGCTTCTGAATGTAAAAAGCTGTTGACTT
ACCATTTCCATGTAAATAATATTTTAAAAGGTGTATGGAGTTAGCTAGTCCCTCCCACCC
CACCCCCAATAGTTAGTAGCCTCCGAGGATGTTTGCCAAAAACATCGGGGCTTCTGACCT
TGTGACTGTGAGGATGTAAATCAGCCTCCCTGGTGGTGAGTGGCCTCCAGAGCTGAGTGG
ACACCGCCTCGCAGTCCCAAGGCACCAGCTGCTGCCCCTAAACGCAAAAGCAAAGCAGCT
ACTGACTTCCGGTTGCCCAGGGGAGGGGACACCCTGGCTTCCTCCCCAACCTTGGGAGCT
GTGCTTAACGTCGGGGGCTTACTTGGTGTCTGTTGGAGCGTGAGGTCCTGTCCTGCCTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTCCAGCCAAGAAACCCGAGCCCTTTTCTTTGAAAGGTTCATATTCAAAGTCAAATAAA
TTGGATGAAAATCGGTACTGTCATTGACTATGCCTATAAATGGTCCTGACCCTTTCCCAC
CCTGTCCCTGCCCCCACTGATTCAACAAAGGCCAAGAAAGAGACGGGGAGAGGCAATGGT
GGATTTGCGTTGACAGGCTTTTGAAAAGGTGTTGTCATTTTGGCAACAGGGTATTCTACA
AGTGGGGCTCCAGCTGAAAGAGAATAGGTGCTAAGAGCTTTCAGGATCCTACAAAAGAAA
AACAGCTTCTCTTTGCTCTGCAGTGAAGGTGGCCTGAGAATGAAGCTTCTGTCTTTTGGG
GGATAATAGCTATATCAACTCGTACAAGAAAACCTCTGTCTCTTCAGCAGTGCTGTCCTG
CCCAGTGACACAAAAGGAAAGAGTCATCCATGCCTGTCAGAAGCAGGAATGGTAGATCCC
ATCTCCCCAGGCTGGAGCCTCTGTTGATAGAAGCTTCTGAATGTAAAAAGCTGTTGACTT
ACCATTTCCATGTAAATAATATTTTAAAAGGTGTATGGAGTTAGCTAGTCCCTCCCACCC
CACCCCCAATAGTTAGTAGCCTCCGAGGATGTTTGCCAAAAACATCGGGGCTTCTGACCT
TGTGACTGTGAGGATGTAAATCAGCCTCCCTGGTGGTGAGTGGCCTCCAGAGCTGAGTGG
ACACCGCCTCGCAGTCCCAAGGCACCAGCTGCTGCCCCTAAACGCAAAAGCAAAGCAGCT
ACTGACTTCCGGTTGCCCAGGGGAGGGGACACCCTGGCTTCCTCCCCAACCTTGGGAGCT
GTGCTTAACGTCGGGGGCTTACTTGGTGTCTGTTGGAGCGTGAGGTCCTGTCCTGCCTTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               646-756, + strand, RNAz p=0.96954

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               646-756, + strand, RNAz p=0.96954

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-900, gnl|bosTau2|chr15 (38537088-38537981)
               

               
               1-900, gnl|Hg17|chr11 (33646780-33647683)
               

               
               1-900, gnl|Mm7|chr2 (103999047-103998197)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-900, gnl|bosTau2|chr15 (38537088-38537981)
               

               
               1-900, gnl|Hg17|chr11 (33646780-33647683)
               

               
               1-900, gnl|Mm7|chr2 (103999047-103998197)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	1-900, gnl\|bosTau2\|chr15 (38537088-38537981)
	1-900, gnl\|Hg17\|chr11 (33646780-33647683)
	1-900, gnl\|Mm7\|chr2 (103999047-103998197)