Non-Coding RNA Search

Ss1.1-Pig2-142B22.5

Sequence:


               
               TTTTTTCCTTTTTTCCGATTATTTTGTTTTGGTTTTTTGAAGCAGGTGTTTAAGGTTTAA
CCTTCTTCAGGGACAAATTCTGACTGTTGGGGAGCTTACTCTGCAATACAAAAAATATCT
TCATGCTCTGGTAGGGCCTTGTTGGTGGAGCTGTGTACTGCCTTGTCTGCACTTCAGCCC
CCGACCCCCTCTGATTCTCTGTTGAAAAGTGTGTCCTTTCTCTTTGTCTGTACGTGTTTA
CCATGACGCAATAATTTGAGGGCAAACTTAGTAGTGAGTGTGGATGATAGAATCAAGAGA
ATTATGGGACGCTGACTTGAGAAAACCACGACAGTGATTTGCTTCTAGGGAAAAGGCAGT
GACTAATTATGCAAATTTGCCAGGAGAAGGGGAAACACACGAATGGGCCTTATTGGATGA
GGGTGTGAGTTAGGTACACGTGAAGGAGGAAGTGACACGGGTGTGAGAAGGCCCCGTCCC
AGCGGTCTTCCCGCGACGCCCTCTCGCGGTGGGAAGAAGGGGTCCCGCCGTCTCTACTGC
CTCGGTGCAGGAACCAACGTGGAATTAAGCCCACCTAGACTGTAAGAGGTGAATTTAGAC
AACTAGGTGATGTCACGCAGGCCAGAACCTCCTCTGTTATCTTTGCCTAAAAGAAACTAT
CTGGGGAGATCCAGAGAAACCTCTAAAAGAATTTGATCTTCCACCCACAGGGAAGGGAAT
TTTAAAACACAAACAAAAACACCCACTCCCGTGGCTCAGGATACGATGGGGAGGGGGACG
GAGGGAACCGGGGTGATCTGGATTTTAAAACCAGGGCTGTGTGGGCCATCGTGGGGCCCA
TCCGCCAGCGCCCGGCACTGTTAGAAGCTCCATCAGCCAGGACAGTGGGAATTAACTGGT
GCATTAACTCCCCCTGAGTTGCTGTTCAGAGAACCTGGGGGGAAAAAAAACTACACCCAT
ACACGGGTCAGATTTATTACCTGAACCTGAGTACTTCCAGCATACTTGTTCGGGTGTAGA
CAGGAATAAGGGTGTCTTTTTTGAAGTGCTCTGTGCCCTCCGTCTCCCCAAGCATCTGAC
ACCCCCAAAAGCCATCCACAGCCGTGCAACCTGAGCAACACTTTGACCCGGTGTTGTCAC
CTGACCAAGCCCACCTCCGTCCCCACCCCCAAGATCAAGTTCAGACTCCCCTCCTGAGAG
GCAGAGGTAAAGGCCCAGGGCTGTTTCTGGCAGGGGATTTCGTCCAGTTCAAACCCCCAC
AGTGGGCTGTCTCCCCTCATTTCCTTTCTCTAAAGGAGCAAAGGCCTCTTTTAGAAAATA
ATAAAATGCAATGTGTGTGATTTACTTTACTGATCTCTTTGAGAAATAGATAAATATCTT
ATAAAAGTGTGTTCTTAACTCCAGAACCACTCTTTTTGCATAAATACCTCATCGGGCAGC
TTTCTAAGTGTTATTTTCCTGAGTCTCCCTCAGTCCCTTTGGAGGAGCCGCTGGGAGACG
TCGGGGAAACTTTAGTGAGGGTACTTTTTTCTATTTTTCTTCTGTTTTTGGAGGCATACA
CATTATGCATAACCAAAACAATGGCTCAATTGTGTTTAACTTTGTATTTTGATTGTTGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTCCTTTTTTCCGATTATTTTGTTTTGGTTTTTTGAAGCAGGTGTTTAAGGTTTAA
CCTTCTTCAGGGACAAATTCTGACTGTTGGGGAGCTTACTCTGCAATACAAAAAATATCT
TCATGCTCTGGTAGGGCCTTGTTGGTGGAGCTGTGTACTGCCTTGTCTGCACTTCAGCCC
CCGACCCCCTCTGATTCTCTGTTGAAAAGTGTGTCCTTTCTCTTTGTCTGTACGTGTTTA
CCATGACGCAATAATTTGAGGGCAAACTTAGTAGTGAGTGTGGATGATAGAATCAAGAGA
ATTATGGGACGCTGACTTGAGAAAACCACGACAGTGATTTGCTTCTAGGGAAAAGGCAGT
GACTAATTATGCAAATTTGCCAGGAGAAGGGGAAACACACGAATGGGCCTTATTGGATGA
GGGTGTGAGTTAGGTACACGTGAAGGAGGAAGTGACACGGGTGTGAGAAGGCCCCGTCCC
AGCGGTCTTCCCGCGACGCCCTCTCGCGGTGGGAAGAAGGGGTCCCGCCGTCTCTACTGC
CTCGGTGCAGGAACCAACGTGGAATTAAGCCCACCTAGACTGTAAGAGGTGAATTTAGAC
AACTAGGTGATGTCACGCAGGCCAGAACCTCCTCTGTTATCTTTGCCTAAAAGAAACTAT
CTGGGGAGATCCAGAGAAACCTCTAAAAGAATTTGATCTTCCACCCACAGGGAAGGGAAT
TTTAAAACACAAACAAAAACACCCACTCCCGTGGCTCAGGATACGATGGGGAGGGGGACG
GAGGGAACCGGGGTGATCTGGATTTTAAAACCAGGGCTGTGTGGGCCATCGTGGGGCCCA
TCCGCCAGCGCCCGGCACTGTTAGAAGCTCCATCAGCCAGGACAGTGGGAATTAACTGGT
GCATTAACTCCCCCTGAGTTGCTGTTCAGAGAACCTGGGGGGAAAAAAAACTACACCCAT
ACACGGGTCAGATTTATTACCTGAACCTGAGTACTTCCAGCATACTTGTTCGGGTGTAGA
CAGGAATAAGGGTGTCTTTTTTGAAGTGCTCTGTGCCCTCCGTCTCCCCAAGCATCTGAC
ACCCCCAAAAGCCATCCACAGCCGTGCAACCTGAGCAACACTTTGACCCGGTGTTGTCAC
CTGACCAAGCCCACCTCCGTCCCCACCCCCAAGATCAAGTTCAGACTCCCCTCCTGAGAG
GCAGAGGTAAAGGCCCAGGGCTGTTTCTGGCAGGGGATTTCGTCCAGTTCAAACCCCCAC
AGTGGGCTGTCTCCCCTCATTTCCTTTCTCTAAAGGAGCAAAGGCCTCTTTTAGAAAATA
ATAAAATGCAATGTGTGTGATTTACTTTACTGATCTCTTTGAGAAATAGATAAATATCTT
ATAAAAGTGTGTTCTTAACTCCAGAACCACTCTTTTTGCATAAATACCTCATCGGGCAGC
TTTCTAAGTGTTATTTTCCTGAGTCTCCCTCAGTCCCTTTGGAGGAGCCGCTGGGAGACG
TCGGGGAAACTTTAGTGAGGGTACTTTTTTCTATTTTTCTTCTGTTTTTGGAGGCATACA
CATTATGCATAACCAAAACAATGGCTCAATTGTGTTTAACTTTGTATTTTGATTGTTGAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               202-321, + strand, RNAz p=0.766093

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               202-321, + strand, RNAz p=0.766093

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_005197, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_005197, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-500, gnl|bosTau2|chr10 (68417932-68417442)
               

               
               3-500, gnl|Hg17|chr14 (88696991-88696500)
               

               
               3-500, gnl|Mm7|chr12 (96689627-96689120)
               


               
               521-1620, gnl|bosTau2|chr10 (68417441-68416360)
               

               
               521-1620, gnl|Hg17|chr14 (88696472-88695346)
               

               
               521-1620, gnl|Mm7|chr12 (96689119-96688037)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-500, gnl|bosTau2|chr10 (68417932-68417442)
               

               
               3-500, gnl|Hg17|chr14 (88696991-88696500)
               

               
               3-500, gnl|Mm7|chr12 (96689627-96689120)
               


               
               521-1620, gnl|bosTau2|chr10 (68417441-68416360)
               

               
               521-1620, gnl|Hg17|chr14 (88696472-88695346)
               

               
               521-1620, gnl|Mm7|chr12 (96689119-96688037)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               cty (0.20816)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.20816)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

	3-500, gnl\|bosTau2\|chr10 (68417932-68417442)
	3-500, gnl\|Hg17\|chr14 (88696991-88696500)
	3-500, gnl\|Mm7\|chr12 (96689627-96689120)

	521-1620, gnl\|bosTau2\|chr10 (68417441-68416360)
	521-1620, gnl\|Hg17\|chr14 (88696472-88695346)
	521-1620, gnl\|Mm7\|chr12 (96689119-96688037)

	cty (0.20816)
	fty (0.17584)
	ill (0.175593)
	cut (0.169924)
	cje (0.165235)
	cki (0.165235)
	nco (0.161734)
	hyp (0.142837)
	csk (0.140746)
	ssp (0.13552)
	ese (0.126502)
	bla (0.124347)
	ebs (0.118301)
	jca (0.11396)
	ldo (0.0970026)