Non-Coding RNA Search

Ss1.1-Pig2-142E19.5

Sequence:


               
               GAAAACTTGGTGATAAATGCTAATCTCGTGGTAGTTTTATGACAGGCTAAGTAGGGAATT
TTGCATTGGAAAAGCAATGCAAAATTTTGCATTGGAAAAGCACATTCTATTCCTGCCCTC
CAAGGGTGCCAAGATAGAGTAGCAGTGAGTTAACTTGAGAATTCACAGCTATGTTAATGA
AATTTGATTGCTCTAAACTGACACATACATAAACCAAATGATCAGAAGTTTGTTTGTAAG
AGAAGTTTGCCTCTGAAACATCTGCTCTCATTACAATAGAAATGATCTTGCCAGTGGGTC
TAGAATGTTCCAAGTGTTTCAGATCTGATACTATGCATCTGTTTTTTTATTCCATAATGT
TAATTTGGGCACAGCCAGCTTTTGTTTCTGTGACTCCTCTCGTTCTGTTAACTTATTGGT
ATGTATTTTGCCTGAAGTTTCTTAAGGTAGCTTGATAAGCAAGATACATTGAAGGTTGTG
TGGCTAGGAGTGATTCTGGTCTCATAAAAGTGAATTAACCTGTTCTCTGTGATCCATTCA
TCTCAAATAAATTCTGACAGCTAATTTCCTTTATTTCCAAGTTTGGGGAAGAAGCCTCAC
TTAAAACTTGTTTAGTATTTGGTTTAATTTTATTTGCCTGTTAAGTAATGAGTACATTCT
TTTTTTAAGTTGTGTTTTTCAAGCAGTTTCACTTAGTTTGAAAGTTTTCACATGTGCTCA
TTTGTCAGCAATAATTGAGATTTCATTTTCTGAATGTACTCAAAACCCCCAAGGACTATT
GAACAGGATGTTTGCTGATAAAAAATCCAAAACAGGGGTATGTGTATATGGCATGAATTC
AATTAGACATTGAATTTCAGCTCAGTATCTATTACAAGGAATTATTAATAAAGTTTGTTT
ATTGACAACATAAATCCAAGGCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAACTTGGTGATAAATGCTAATCTCGTGGTAGTTTTATGACAGGCTAAGTAGGGAATT
TTGCATTGGAAAAGCAATGCAAAATTTTGCATTGGAAAAGCACATTCTATTCCTGCCCTC
CAAGGGTGCCAAGATAGAGTAGCAGTGAGTTAACTTGAGAATTCACAGCTATGTTAATGA
AATTTGATTGCTCTAAACTGACACATACATAAACCAAATGATCAGAAGTTTGTTTGTAAG
AGAAGTTTGCCTCTGAAACATCTGCTCTCATTACAATAGAAATGATCTTGCCAGTGGGTC
TAGAATGTTCCAAGTGTTTCAGATCTGATACTATGCATCTGTTTTTTTATTCCATAATGT
TAATTTGGGCACAGCCAGCTTTTGTTTCTGTGACTCCTCTCGTTCTGTTAACTTATTGGT
ATGTATTTTGCCTGAAGTTTCTTAAGGTAGCTTGATAAGCAAGATACATTGAAGGTTGTG
TGGCTAGGAGTGATTCTGGTCTCATAAAAGTGAATTAACCTGTTCTCTGTGATCCATTCA
TCTCAAATAAATTCTGACAGCTAATTTCCTTTATTTCCAAGTTTGGGGAAGAAGCCTCAC
TTAAAACTTGTTTAGTATTTGGTTTAATTTTATTTGCCTGTTAAGTAATGAGTACATTCT
TTTTTTAAGTTGTGTTTTTCAAGCAGTTTCACTTAGTTTGAAAGTTTTCACATGTGCTCA
TTTGTCAGCAATAATTGAGATTTCATTTTCTGAATGTACTCAAAACCCCCAAGGACTATT
GAACAGGATGTTTGCTGATAAAAAATCCAAAACAGGGGTATGTGTATATGGCATGAATTC
AATTAGACATTGAATTTCAGCTCAGTATCTATTACAAGGAATTATTAATAAAGTTTGTTT
ATTGACAACATAAATCCAAGGCTC

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               85-264, gnl|bosTau2|chr2 (38537664-38537476)
               

               
               85-264, gnl|Hg17|chr2 (135549818-135549996)
               

               
               85-264, gnl|Mm7|chr1 (127686924-127687099)
               


               
               308-924, gnl|bosTau2|chr2 (38537473-38536850)
               

               
               308-924, gnl|Hg17|chr2 (135549999-135550654)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               85-264, gnl|bosTau2|chr2 (38537664-38537476)
               

               
               85-264, gnl|Hg17|chr2 (135549818-135549996)
               

               
               85-264, gnl|Mm7|chr1 (127686924-127687099)
               


               
               308-924, gnl|bosTau2|chr2 (38537473-38536850)
               

               
               308-924, gnl|Hg17|chr2 (135549999-135550654)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

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               sag (0.36543)
               

               
               thg (0.253582)
               

               
               pgl (0.236967)
               

               
               aor (0.195274)
               

               
               sin (0.174948)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               pla (0.133672)
               

               
               ret (0.128733)
               

               
               tra (0.123092)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.36543)
               

               
               thg (0.253582)
               

               
               pgl (0.236967)
               

               
               aor (0.195274)
               

               
               sin (0.174948)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               pla (0.133672)
               

               
               ret (0.128733)
               

               
               tra (0.123092)

	85-264, gnl\|bosTau2\|chr2 (38537664-38537476)
	85-264, gnl\|Hg17\|chr2 (135549818-135549996)
	85-264, gnl\|Mm7\|chr1 (127686924-127687099)

	308-924, gnl\|bosTau2\|chr2 (38537473-38536850)
	308-924, gnl\|Hg17\|chr2 (135549999-135550654)

	sag (0.36543)
	thg (0.253582)
	pgl (0.236967)
	aor (0.195274)
	sin (0.174948)
	liv (0.146284)
	spl (0.143184)
	pla (0.133672)
	ret (0.128733)
	tra (0.123092)