Ss1.1-Pig2-142M08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TATGTCCACAGACTTAGAGGGAACAGACATGTTGGCAGAGAAGGCGGATCGAAGAGAATA CATTGATCTTTTAAAAAAAATGCTAACAATTGATGCAGATAAGAGAATTACTCCTCTGAA AACTCTTAACCATCAGTTTGTAACAATGACTCACCTTCTGGATTTTCCACATAGCAATCA TGTTAAGTCATGTTTTCAGAACATGGAGATCTGCAAGCGGAGGGTTCACATGTATGATAC AGTGAGTCAGATCAAGAGTCCCTTCACTACACATGTTGCTCCAAATACAAGCACAAATCT AACCATGAGTTTTAGCAACCAACTCAATACAGTGCACAATCAGGCCAGTGTTCTAGCATC CAGTTCTACTGCAGCAGCTGCTACTCTTTCTCTGGCTAATTCAGATGTCTCACTGCTAAA CTACCAGTCGGCTTTGTACCCATCATCTGCAGCACCAGTCCCTGGAGTTGCCCAGCAGGG TGTTTCCTTGCAGCCTGGAACCACCCAGATTTGCACTCAGACAGATCCATTTCAGCAAAC GTTTATAGTATGTCCACCTGCTTTTCAAAAGTTGGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TATGTCCACAGACTTAGAGGGAACAGACATGTTGGCAGAGAAGGCGGATCGAAGAGAATA CATTGATCTTTTAAAAAAAATGCTAACAATTGATGCAGATAAGAGAATTACTCCTCTGAA AACTCTTAACCATCAGTTTGTAACAATGACTCACCTTCTGGATTTTCCACATAGCAATCA TGTTAAGTCATGTTTTCAGAACATGGAGATCTGCAAGCGGAGGGTTCACATGTATGATAC AGTGAGTCAGATCAAGAGTCCCTTCACTACACATGTTGCTCCAAATACAAGCACAAATCT AACCATGAGTTTTAGCAACCAACTCAATACAGTGCACAATCAGGCCAGTGTTCTAGCATC CAGTTCTACTGCAGCAGCTGCTACTCTTTCTCTGGCTAATTCAGATGTCTCACTGCTAAA CTACCAGTCGGCTTTGTACCCATCATCTGCAGCACCAGTCCCTGGAGTTGCCCAGCAGGG TGTTTCCTTGCAGCCTGGAACCACCCAGATTTGCACTCAGACAGATCCATTTCAGCAAAC GTTTATAGTATGTCCACCTGCTTTTCAAAAGTTGGA |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 2-120, + strand, RNAz p=0.913103 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 2-120, + strand, RNAz p=0.913103 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 2-180, gnl|bosTau2|chr3 (27205176-27204998) | |
| 2-180, gnl|canFam2|chr17 (54838074-54838276) | |
| 2-180, gnl|danRer3|chr18 (4634156-4634364) | |
| 2-180, gnl|dasNov1|scaffold_4311 (34341-34133) | |
| 2-180, gnl|echTel1|scaffold_154911 (6443-6651) | |
| 2-180, gnl|fr1|chrUn (77011499-77011308) | |
| 2-180, gnl|galGal2|chr26 (2350506-2350712) | |
| 2-180, gnl|hg17|chr1 (114211290-114211498) | |
| 2-180, gnl|Hg17|chr1 (114211297-114211475) | |
| 2-180, gnl|loxAfr1|scaffold_1119 (139355-139563) | |
| 2-180, gnl|mm7|chr3 (103555658-103555462) | |
| 2-180, gnl|Mm7|chr3 (103555649-103555471) | |
| 2-180, gnl|monDom2|scaffold_0 (1059466-1059263) | |
| 2-180, gnl|oryCun1|scaffold_154319 (4284-4476) | |
| 2-180, gnl|panTro1|chr1_random (7174277-7174069) | |
| 2-180, gnl|rheMac2|chr1 (116955824-116956032) | |
| 2-180, gnl|rn3|chr2 (198948009-198947803) | |
| 2-180, gnl|tetNig1|chr9 (10299266-10299454) | |
| 2-180, gnl|xenTro1|scaffold_143 (883947-883753) | |
| 181-344, gnl|bosTau2|chr3 (27204632-27204469) | |
| 181-344, gnl|canFam2|chr17 (54838549-54838741) | |
| 181-344, gnl|danRer3|chr18 (4634411-4634593) | |
| 181-344, gnl|dasNov1|scaffold_4311 (33817-33628) | |
| 181-344, gnl|echTel1|scaffold_154911 (6921-7116) | |
| 181-344, gnl|fr1|chrUn (77011196-77011022) | |
| 181-344, gnl|galGal2|chr26 (2351026-2351194) | |
| 181-344, gnl|hg17|chr1 (114211771-114211962) | |
| 181-344, gnl|Hg17|chr1 (114211788-114211951) | |
| 181-344, gnl|loxAfr1|scaffold_1119 (140001-140192) | |
| 181-344, gnl|mm7|chr3 (103554658-103554471) | |
| 181-344, gnl|Mm7|chr3 (103554641-103554478) | |
| 181-344, gnl|monDom2|scaffold_0 (1058919-1058732) | |
| 181-344, gnl|oryCun1|scaffold_213099 (29216-29048) | |
| 181-344, gnl|panTro1|chr1_random (7173795-7173604) | |
| 181-344, gnl|rheMac2|chr1 (116956301-116956492) | |
| 181-344, gnl|rn3|chr2 (198947547-198947358) | |
| 181-344, gnl|tetNig1|chr9 (10299544-10299714) | |
| 181-344, gnl|xenTro1|scaffold_143 (883081-882892) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-180, gnl|bosTau2|chr3 (27205176-27204998) | |
| 2-180, gnl|canFam2|chr17 (54838074-54838276) | |
| 2-180, gnl|danRer3|chr18 (4634156-4634364) | |
| 2-180, gnl|dasNov1|scaffold_4311 (34341-34133) | |
| 2-180, gnl|echTel1|scaffold_154911 (6443-6651) | |
| 2-180, gnl|fr1|chrUn (77011499-77011308) | |
| 2-180, gnl|galGal2|chr26 (2350506-2350712) | |
| 2-180, gnl|hg17|chr1 (114211290-114211498) | |
| 2-180, gnl|Hg17|chr1 (114211297-114211475) | |
| 2-180, gnl|loxAfr1|scaffold_1119 (139355-139563) | |
| 2-180, gnl|mm7|chr3 (103555658-103555462) | |
| 2-180, gnl|Mm7|chr3 (103555649-103555471) | |
| 2-180, gnl|monDom2|scaffold_0 (1059466-1059263) | |
| 2-180, gnl|oryCun1|scaffold_154319 (4284-4476) | |
| 2-180, gnl|panTro1|chr1_random (7174277-7174069) | |
| 2-180, gnl|rheMac2|chr1 (116955824-116956032) | |
| 2-180, gnl|rn3|chr2 (198948009-198947803) | |
| 2-180, gnl|tetNig1|chr9 (10299266-10299454) | |
| 2-180, gnl|xenTro1|scaffold_143 (883947-883753) | |
| 181-344, gnl|bosTau2|chr3 (27204632-27204469) | |
| 181-344, gnl|canFam2|chr17 (54838549-54838741) | |
| 181-344, gnl|danRer3|chr18 (4634411-4634593) | |
| 181-344, gnl|dasNov1|scaffold_4311 (33817-33628) | |
| 181-344, gnl|echTel1|scaffold_154911 (6921-7116) | |
| 181-344, gnl|fr1|chrUn (77011196-77011022) | |
| 181-344, gnl|galGal2|chr26 (2351026-2351194) | |
| 181-344, gnl|hg17|chr1 (114211771-114211962) | |
| 181-344, gnl|Hg17|chr1 (114211788-114211951) | |
| 181-344, gnl|loxAfr1|scaffold_1119 (140001-140192) | |
| 181-344, gnl|mm7|chr3 (103554658-103554471) | |
| 181-344, gnl|Mm7|chr3 (103554641-103554478) | |
| 181-344, gnl|monDom2|scaffold_0 (1058919-1058732) | |
| 181-344, gnl|oryCun1|scaffold_213099 (29216-29048) | |
| 181-344, gnl|panTro1|chr1_random (7173795-7173604) | |
| 181-344, gnl|rheMac2|chr1 (116956301-116956492) | |
| 181-344, gnl|rn3|chr2 (198947547-198947358) | |
| 181-344, gnl|tetNig1|chr9 (10299544-10299714) | |
| 181-344, gnl|xenTro1|scaffold_143 (883081-882892) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| kid (0.129735) |