Non-Coding RNA Search

Ss1.1-Pig2-142M17.5

Sequence:


               
               TGTTTGACGAAGCTGAGTCCTATACACCGCCCGCTGCTTTCCTGATCATGGCTTCTCCGA
GTTCCTTCACCTACTATTGCCCTCCATCTTCCTCCCCTGTCTGGTCAGAGCCGCTGTACA
GTCTGAGGCCCGAGCACGCGCGGGAGCGGTTGCAGGACGACTCAGTGGAAACAGTCACGT
CCATTGAACAGGCAAAAGTAGAAGAAAAAATCCAAGAGGTCTTCAGTTCTTACAAGTTCA
ACCACCTTGTACCAAGGCTTATTTTGCAGAGGGAGAAGCACTTCCATTATCTGAAAAGAG
GCCTCCGACACCTGACAGATGCCTATGAGTGTCTAGATGCCAGCCGCCCATGGCTCTGCT
ATTGGATCCTGCACAGCCTGGAACTACTGGATGAACCCATCCCCCAGATGGTGGCCACAG
ATGTGTGTCAGTTCCTGGAGCTGTGTCAAAGCCCAGAAGGTGGCTTTGGAGGGGGCCCTG
GCCAGTATCCACACCTTGCACCCACGTACGCAGCAGTCAATGCGCTGTGCATCATTGGCA
CCGAGGAGGCCTACGATGTCATTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTTGACGAAGCTGAGTCCTATACACCGCCCGCTGCTTTCCTGATCATGGCTTCTCCGA
GTTCCTTCACCTACTATTGCCCTCCATCTTCCTCCCCTGTCTGGTCAGAGCCGCTGTACA
GTCTGAGGCCCGAGCACGCGCGGGAGCGGTTGCAGGACGACTCAGTGGAAACAGTCACGT
CCATTGAACAGGCAAAAGTAGAAGAAAAAATCCAAGAGGTCTTCAGTTCTTACAAGTTCA
ACCACCTTGTACCAAGGCTTATTTTGCAGAGGGAGAAGCACTTCCATTATCTGAAAAGAG
GCCTCCGACACCTGACAGATGCCTATGAGTGTCTAGATGCCAGCCGCCCATGGCTCTGCT
ATTGGATCCTGCACAGCCTGGAACTACTGGATGAACCCATCCCCCAGATGGTGGCCACAG
ATGTGTGTCAGTTCCTGGAGCTGTGTCAAAGCCCAGAAGGTGGCTTTGGAGGGGGCCCTG
GCCAGTATCCACACCTTGCACCCACGTACGCAGCAGTCAATGCGCTGTGCATCATTGGCA
CCGAGGAGGCCTACGATGTCATTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61554729|gb|AAX46605.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61554729|gb|AAX46605.1|

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               8-192, gnl|bosTau2|chr10 (52418306-52418490)
               

               
               8-192, gnl|canFam2|chr8 (42393931-42394061)
               

               
               8-192, gnl|dasNov1|scaffold_46575 (16332-16201)
               

               
               8-192, gnl|echTel1|scaffold_320920 (81417-81548)
               

               
               8-192, gnl|hg17|chr14 (64523380-64523511)
               

               
               8-192, gnl|Hg17|chr14 (64523385-64523569)
               

               
               8-192, gnl|mm7|chr12 (74796148-74796279)
               

               
               8-192, gnl|Mm7|chr12 (74796153-74796337)
               

               
               8-192, gnl|monDom2|scaffold_8 (78929289-78929431)
               

               
               8-192, gnl|panTro1|chr15 (64125924-64126055)
               

               
               8-192, gnl|rheMac2|chr7 (127986097-127986228)
               

               
               8-192, gnl|rn3|chr6 (99431423-99431554)
               


               
               423-564, gnl|bosTau2|chr10 (52470202-52470343)
               

               
               423-564, gnl|Hg17|chr14 (64563925-64564066)
               

               
               423-564, gnl|Mm7|chr12 (74846418-74846559)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-192, gnl|bosTau2|chr10 (52418306-52418490)
               

               
               8-192, gnl|canFam2|chr8 (42393931-42394061)
               

               
               8-192, gnl|dasNov1|scaffold_46575 (16332-16201)
               

               
               8-192, gnl|echTel1|scaffold_320920 (81417-81548)
               

               
               8-192, gnl|hg17|chr14 (64523380-64523511)
               

               
               8-192, gnl|Hg17|chr14 (64523385-64523569)
               

               
               8-192, gnl|mm7|chr12 (74796148-74796279)
               

               
               8-192, gnl|Mm7|chr12 (74796153-74796337)
               

               
               8-192, gnl|monDom2|scaffold_8 (78929289-78929431)
               

               
               8-192, gnl|panTro1|chr15 (64125924-64126055)
               

               
               8-192, gnl|rheMac2|chr7 (127986097-127986228)
               

               
               8-192, gnl|rn3|chr6 (99431423-99431554)
               


               
               423-564, gnl|bosTau2|chr10 (52470202-52470343)
               

               
               423-564, gnl|Hg17|chr14 (64563925-64564066)
               

               
               423-564, gnl|Mm7|chr12 (74846418-74846559)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tbr (0.154178)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.154178)

	8-192, gnl\|bosTau2\|chr10 (52418306-52418490)
	8-192, gnl\|canFam2\|chr8 (42393931-42394061)
	8-192, gnl\|dasNov1\|scaffold_46575 (16332-16201)
	8-192, gnl\|echTel1\|scaffold_320920 (81417-81548)
	8-192, gnl\|hg17\|chr14 (64523380-64523511)
	8-192, gnl\|Hg17\|chr14 (64523385-64523569)
	8-192, gnl\|mm7\|chr12 (74796148-74796279)
	8-192, gnl\|Mm7\|chr12 (74796153-74796337)
	8-192, gnl\|monDom2\|scaffold_8 (78929289-78929431)
	8-192, gnl\|panTro1\|chr15 (64125924-64126055)
	8-192, gnl\|rheMac2\|chr7 (127986097-127986228)
	8-192, gnl\|rn3\|chr6 (99431423-99431554)

	423-564, gnl\|bosTau2\|chr10 (52470202-52470343)
	423-564, gnl\|Hg17\|chr14 (64563925-64564066)
	423-564, gnl\|Mm7\|chr12 (74846418-74846559)