Ss1.1-Pig2-142O09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAAAGCTTGGCTTCCGACGTCCATCCAGCAGGGAAGGAGGGTAACTGGTCCCCTTGGGC TGGGGGTCTGCAGCAGGGCTGGACCGTGAGGACCTCTACTCGGCCAGGCTGTTGCGCACG GCCTCCTTCTCCTGCAGGGCCGCCATGGCGAGGCGCAGGTGCTCCTTCAGCTGCTCGATC TCCCGCTCCGACCGCGTCTTGATGTGGTTCAGCTCCACATACACGTCTTGGTACTTCCCC GAGGTGAAGCGCTTGTCCTTCTGCATCATCTGGAGCTCATCCCGGAGGCACTGCACCTCC TTCTTCAGGTACTGCAGCTCGTTCTCCTTCACTCGCAGCAGAACCTCCAGCTCACAGGAG CTCCGCTCGCTGCCGCGCCCGCAGCCGCTGCCCGGGCCCTGTGAGGCGATGAAGCCGCGC AGCCGGTCAATCTCCTCGGACAGGCGGGTGTGCAGCTCCTGGTTGTGGCGCAGCAGCTCC TGGCCCTCCTGCTGGCAGCGCCGCAGCGTGTGCTCGCGCTCCTCCGCCTGCCGCGTTAGG GCCCCGATCTCCAGGCACTTCTGCGAGTACTGCTCTGAGAGCACCTGCAGCTCCCGCTTC AGCGCCTCCACGTCCGACTGGTGCTGCTTCCGGAGGCCGTCTGGGCCCAGCTGGAGACTC CGAGTCTTGCTCAGCTCCCGGCTCAGCTCCTCCTGGTAGGCCTTCTTCATGGCTTCGATG GCTGAGGCTGTGGCTGCTGTCTCCTCGGCCAGGAGCCACTCCTTCTCCTGCTGTAGCCGC TGCAGCTCCCGCTCGTGGTGCCGCTGCAGCTCCTCCATCACCTGCTGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAAAGCTTGGCTTCCGACGTCCATCCAGCAGGGAAGGAGGGTAACTGGTCCCCTTGGGC TGGGGGTCTGCAGCAGGGCTGGACCGTGAGGACCTCTACTCGGCCAGGCTGTTGCGCACG GCCTCCTTCTCCTGCAGGGCCGCCATGGCGAGGCGCAGGTGCTCCTTCAGCTGCTCGATC TCCCGCTCCGACCGCGTCTTGATGTGGTTCAGCTCCACATACACGTCTTGGTACTTCCCC GAGGTGAAGCGCTTGTCCTTCTGCATCATCTGGAGCTCATCCCGGAGGCACTGCACCTCC TTCTTCAGGTACTGCAGCTCGTTCTCCTTCACTCGCAGCAGAACCTCCAGCTCACAGGAG CTCCGCTCGCTGCCGCGCCCGCAGCCGCTGCCCGGGCCCTGTGAGGCGATGAAGCCGCGC AGCCGGTCAATCTCCTCGGACAGGCGGGTGTGCAGCTCCTGGTTGTGGCGCAGCAGCTCC TGGCCCTCCTGCTGGCAGCGCCGCAGCGTGTGCTCGCGCTCCTCCGCCTGCCGCGTTAGG GCCCCGATCTCCAGGCACTTCTGCGAGTACTGCTCTGAGAGCACCTGCAGCTCCCGCTTC AGCGCCTCCACGTCCGACTGGTGCTGCTTCCGGAGGCCGTCTGGGCCCAGCTGGAGACTC CGAGTCTTGCTCAGCTCCCGGCTCAGCTCCTCCTGGTAGGCCTTCTTCATGGCTTCGATG GCTGAGGCTGTGGCTGCTGTCTCCTCGGCCAGGAGCCACTCCTTCTCCTGCTGTAGCCGC TGCAGCTCCCGCTCGTGGTGCCGCTGCAGCTCCTCCATCACCTGCTGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 724-828, - strand, RNAz p=0.805445 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 724-828, - strand, RNAz p=0.805445 |
| Aligned organism(s): 54 entry(ies) | More info |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
| 92-259, gnl|bosTau2|chr5 (67213402-67213569) | |
| 92-259, gnl|canFam2|chr10 (29930973-29930844) | |
| 92-259, gnl|danRer3|chr12 (271655-271757) | |
| 92-259, gnl|dasNov1|scaffold_30008 (12021-12136) | |
| 92-259, gnl|echTel1|scaffold_305016 (1069-1192) | |
| 92-259, gnl|fr1|chrUn (78567193-78567067) | |
| 92-259, gnl|galGal2|chr1 (47836035-47835917) | |
| 92-259, gnl|hg17|chr22 (36493082-36493209) | |
| 92-259, gnl|Hg17|chr22 (36493273-36493106) | |
| 92-259, gnl|loxAfr1|scaffold_75004 (470-344) | |
| 92-259, gnl|mm7|chr15 (79087372-79087495) | |
| 92-259, gnl|Mm7|chr15 (79087559-79087395) | |
| 92-259, gnl|monDom2|scaffold_34 (18012-17885) | |
| 92-259, gnl|rheMac2|chr10 (81690093-81690220) | |
| 92-259, gnl|rn3|chr7 (117003742-117003865) | |
| 92-259, gnl|tetNig1|chrUn_random (38383525-38383651) | |
| 458-615, gnl|bosTau2|chr19 (27361138-27361295) | |
| 458-615, gnl|canFam2|chr5 (45233547-45233356) | |
| 458-615, gnl|danRer3|chr24 (33050637-33050811) | |
| 458-615, gnl|dasNov1|scaffold_30008 (9421-9606) | |
| 458-615, gnl|echTel1|scaffold_129861 (1022-831) | |
| 458-615, gnl|fr1|chrUn (22011401-22011572) | |
| 458-615, gnl|galGal2|chr14 (6818524-6818713) | |
| 458-615, gnl|hg17|chr17 (17017931-17018122) | |
| 458-615, gnl|Hg17|chr17 (17018115-17017958) | |
| 458-615, gnl|loxAfr1|scaffold_10528 (29647-29457) | |
| 458-615, gnl|mm7|chr11 (59848248-59848440) | |
| 458-615, gnl|Mm7|chr11 (59848433-59848276) | |
| 458-615, gnl|monDom2|scaffold_193 (80628-80803) | |
| 458-615, gnl|oryCun1|scaffold_182542 (4100-3930) | |
| 458-615, gnl|panTro1|chr19 (17417784-17417975) | |
| 458-615, gnl|rheMac2|chr16 (17071541-17071732) | |
| 458-615, gnl|rn3|chr10 (46094672-46094862) | |
| 458-615, gnl|tetNig1|chr2 (4946607-4946444) | |
| 458-615, gnl|xenTro1|scaffold_142 (432018-432187) | |
| 724-828, gnl|bosTau2|chr5 (67218600-67218704) | |
| 724-828, gnl|canFam2|chr10 (29935695-29935571) | |
| 724-828, gnl|danRer3|chr12 (265769-265880) | |
| 724-828, gnl|dasNov1|scaffold_30008 (7747-7876) | |
| 724-828, gnl|echTel1|scaffold_295643 (2406-2279) | |
| 724-828, gnl|fr1|chrUn (78569606-78569514) | |
| 724-828, gnl|galGal2|chr1 (47837805-47837688) | |
| 724-828, gnl|hg17|chr22 (36486216-36486343) | |
| 724-828, gnl|Hg17|chr22 (36486322-36486218) | |
| 724-828, gnl|loxAfr1|scaffold_44621 (12072-11958) | |
| 724-828, gnl|mm7|chr15 (79082788-79082914) | |
| 724-828, gnl|Mm7|chr15 (79082894-79082790) | |
| 724-828, gnl|monDom2|scaffold_34 (24666-24546) | |
| 724-828, gnl|oryCun1|scaffold_182542 (7200-7075) | |
| 724-828, gnl|panTro1|chr23 (36664342-36664469) | |
| 724-828, gnl|rheMac2|chr10 (81683883-81684010) | |
| 724-828, gnl|rn3|chr7 (116999135-116999260) | |
| 724-828, gnl|tetNig1|chrUn_random (38382060-38382152) | |
| 724-828, gnl|xenTro1|scaffold_246 (902481-902357) |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 92-259, gnl|bosTau2|chr5 (67213402-67213569) | |
| 92-259, gnl|canFam2|chr10 (29930973-29930844) | |
| 92-259, gnl|danRer3|chr12 (271655-271757) | |
| 92-259, gnl|dasNov1|scaffold_30008 (12021-12136) | |
| 92-259, gnl|echTel1|scaffold_305016 (1069-1192) | |
| 92-259, gnl|fr1|chrUn (78567193-78567067) | |
| 92-259, gnl|galGal2|chr1 (47836035-47835917) | |
| 92-259, gnl|hg17|chr22 (36493082-36493209) | |
| 92-259, gnl|Hg17|chr22 (36493273-36493106) | |
| 92-259, gnl|loxAfr1|scaffold_75004 (470-344) | |
| 92-259, gnl|mm7|chr15 (79087372-79087495) | |
| 92-259, gnl|Mm7|chr15 (79087559-79087395) | |
| 92-259, gnl|monDom2|scaffold_34 (18012-17885) | |
| 92-259, gnl|rheMac2|chr10 (81690093-81690220) | |
| 92-259, gnl|rn3|chr7 (117003742-117003865) | |
| 92-259, gnl|tetNig1|chrUn_random (38383525-38383651) | |
| 458-615, gnl|bosTau2|chr19 (27361138-27361295) | |
| 458-615, gnl|canFam2|chr5 (45233547-45233356) | |
| 458-615, gnl|danRer3|chr24 (33050637-33050811) | |
| 458-615, gnl|dasNov1|scaffold_30008 (9421-9606) | |
| 458-615, gnl|echTel1|scaffold_129861 (1022-831) | |
| 458-615, gnl|fr1|chrUn (22011401-22011572) | |
| 458-615, gnl|galGal2|chr14 (6818524-6818713) | |
| 458-615, gnl|hg17|chr17 (17017931-17018122) | |
| 458-615, gnl|Hg17|chr17 (17018115-17017958) | |
| 458-615, gnl|loxAfr1|scaffold_10528 (29647-29457) | |
| 458-615, gnl|mm7|chr11 (59848248-59848440) | |
| 458-615, gnl|Mm7|chr11 (59848433-59848276) | |
| 458-615, gnl|monDom2|scaffold_193 (80628-80803) | |
| 458-615, gnl|oryCun1|scaffold_182542 (4100-3930) | |
| 458-615, gnl|panTro1|chr19 (17417784-17417975) | |
| 458-615, gnl|rheMac2|chr16 (17071541-17071732) | |
| 458-615, gnl|rn3|chr10 (46094672-46094862) | |
| 458-615, gnl|tetNig1|chr2 (4946607-4946444) | |
| 458-615, gnl|xenTro1|scaffold_142 (432018-432187) | |
| 724-828, gnl|bosTau2|chr5 (67218600-67218704) | |
| 724-828, gnl|canFam2|chr10 (29935695-29935571) | |
| 724-828, gnl|danRer3|chr12 (265769-265880) | |
| 724-828, gnl|dasNov1|scaffold_30008 (7747-7876) | |
| 724-828, gnl|echTel1|scaffold_295643 (2406-2279) | |
| 724-828, gnl|fr1|chrUn (78569606-78569514) | |
| 724-828, gnl|galGal2|chr1 (47837805-47837688) | |
| 724-828, gnl|hg17|chr22 (36486216-36486343) | |
| 724-828, gnl|Hg17|chr22 (36486322-36486218) | |
| 724-828, gnl|loxAfr1|scaffold_44621 (12072-11958) | |
| 724-828, gnl|mm7|chr15 (79082788-79082914) | |
| 724-828, gnl|Mm7|chr15 (79082894-79082790) | |
| 724-828, gnl|monDom2|scaffold_34 (24666-24546) | |
| 724-828, gnl|oryCun1|scaffold_182542 (7200-7075) | |
| 724-828, gnl|panTro1|chr23 (36664342-36664469) | |
| 724-828, gnl|rheMac2|chr10 (81683883-81684010) | |
| 724-828, gnl|rn3|chr7 (116999135-116999260) | |
| 724-828, gnl|tetNig1|chrUn_random (38382060-38382152) | |
| 724-828, gnl|xenTro1|scaffold_246 (902481-902357) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.183925) | |
| ute (0.132784) | |
| jca (0.11396) |