Non-Coding RNA Search

Ss1.1-Pig2-143D04.5

Sequence:


               
               GTTCTCAGAAGCACTCAGCTACCTCAAGCCCAGAACCAAGGAGAGCATGTACCACTCGCT
GACATACGCCACCATCCTGGAGATGCAGGCCATGATGACCTTTGACCCCCAGGACATCCT
ACTGGCTGGCAACATGATGAAGGAGGCGCAGTCGCTCTGTCAGAGGCACCGGAGGAAGTC
CTCTGTAACCGACTCCTTCAGCAGCCTGGTGCACCGGCCCACCCTGGACCAGTTCACGGA
AGAGGAGATCCACGCTGAGGTCTGCTACGCAGAGTGCCTGCTACAGAGAGCAGCCCTGAC
CTTCCTGCAGGACGAGAACATGGTGAGCTTCATCAAGGGCGGCATCAAAGTGCGAAACAG
CTACCAGACCTACACCTGGGCGTGGGACTGCCACGTGGGCTCCAGTTCCTCCACCTGGAG
AAGGAGCGTTTCCGCCAGGCTTTCTCCACGTACCTAGTATGTGGATACGTGAGCCTGGGG
AAGGAGGTCGTGGTCCAACCCGGGGCATTTTGGAGGTCTTATTCGGCAAGGAAGATCCTC
ATCTCAAGTCCCTGGTTTGGCTGACCTCTGACCCCACCCAAGCTGGGCCCCTCCTAAAGC
TGGGCCCAAAGAGGGGCAGGCAGGACCCTGAGCCTTGCCCGAGCTGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCTCAGAAGCACTCAGCTACCTCAAGCCCAGAACCAAGGAGAGCATGTACCACTCGCT
GACATACGCCACCATCCTGGAGATGCAGGCCATGATGACCTTTGACCCCCAGGACATCCT
ACTGGCTGGCAACATGATGAAGGAGGCGCAGTCGCTCTGTCAGAGGCACCGGAGGAAGTC
CTCTGTAACCGACTCCTTCAGCAGCCTGGTGCACCGGCCCACCCTGGACCAGTTCACGGA
AGAGGAGATCCACGCTGAGGTCTGCTACGCAGAGTGCCTGCTACAGAGAGCAGCCCTGAC
CTTCCTGCAGGACGAGAACATGGTGAGCTTCATCAAGGGCGGCATCAAAGTGCGAAACAG
CTACCAGACCTACACCTGGGCGTGGGACTGCCACGTGGGCTCCAGTTCCTCCACCTGGAG
AAGGAGCGTTTCCGCCAGGCTTTCTCCACGTACCTAGTATGTGGATACGTGAGCCTGGGG
AAGGAGGTCGTGGTCCAACCCGGGGCATTTTGGAGGTCTTATTCGGCAAGGAAGATCCTC
ATCTCAAGTCCCTGGTTTGGCTGACCTCTGACCCCACCCAAGCTGGGCCCCTCCTAAAGC
TGGGCCCAAAGAGGGGCAGGCAGGACCCTGAGCCTTGCCCGAGCTGTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55961750|emb|CAI13023.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55961750|emb|CAI13023.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               49-166, - strand, RNAz p=0.876276
               

               
               423-552, + strand, RNAz p=0.765384
               

               
               423-514, + strand, RNAz p=0.928981

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               49-166, - strand, RNAz p=0.876276
               

               
               423-552, + strand, RNAz p=0.765384
               

               
               423-514, + strand, RNAz p=0.928981

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               31-166, gnl|bosTau2|chr3 (67220598-67220733)
               

               
               31-166, gnl|Hg17|chr1 (51490639-51490504)
               

               
               31-166, gnl|Mm7|chr4 (108797729-108797864)
               


               
               423-552, gnl|bosTau2|chr3 (67224682-67224812)
               

               
               423-552, gnl|canFam2|chr15 (12942216-12941920)
               

               
               423-552, gnl|echTel1|scaffold_321515 (39857-40205)
               

               
               423-552, gnl|hg17|chr1 (51487103-51487379)
               

               
               423-552, gnl|mm7|chr4 (108802653-108802452)
               

               
               423-552, gnl|oryCun1|scaffold_212086 (126518-126750)
               

               
               423-552, gnl|panTro1|chr1 (49697162-49697438)
               

               
               423-552, gnl|rheMac2|chr1 (54133966-54134241)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               31-166, gnl|bosTau2|chr3 (67220598-67220733)
               

               
               31-166, gnl|Hg17|chr1 (51490639-51490504)
               

               
               31-166, gnl|Mm7|chr4 (108797729-108797864)
               


               
               423-552, gnl|bosTau2|chr3 (67224682-67224812)
               

               
               423-552, gnl|canFam2|chr15 (12942216-12941920)
               

               
               423-552, gnl|echTel1|scaffold_321515 (39857-40205)
               

               
               423-552, gnl|hg17|chr1 (51487103-51487379)
               

               
               423-552, gnl|mm7|chr4 (108802653-108802452)
               

               
               423-552, gnl|oryCun1|scaffold_212086 (126518-126750)
               

               
               423-552, gnl|panTro1|chr1 (49697162-49697438)
               

               
               423-552, gnl|rheMac2|chr1 (54133966-54134241)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pgl (0.118483)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)

	49-166, - strand, RNAz p=0.876276
	423-552, + strand, RNAz p=0.765384
	423-514, + strand, RNAz p=0.928981

	31-166, gnl\|bosTau2\|chr3 (67220598-67220733)
	31-166, gnl\|Hg17\|chr1 (51490639-51490504)
	31-166, gnl\|Mm7\|chr4 (108797729-108797864)

	423-552, gnl\|bosTau2\|chr3 (67224682-67224812)
	423-552, gnl\|canFam2\|chr15 (12942216-12941920)
	423-552, gnl\|echTel1\|scaffold_321515 (39857-40205)
	423-552, gnl\|hg17\|chr1 (51487103-51487379)
	423-552, gnl\|mm7\|chr4 (108802653-108802452)
	423-552, gnl\|oryCun1\|scaffold_212086 (126518-126750)
	423-552, gnl\|panTro1\|chr1 (49697162-49697438)
	423-552, gnl\|rheMac2\|chr1 (54133966-54134241)