Ss1.1-Pig2-143D17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGACGTCTTGGCCTCCCTGGAGACCTTGAATCACTCTGTCCTGAAGGCCATGGGCTACA CCAAGGAGGGGGGTGAGGGGGGAAGCAACGTGGACCAGTTTGTGACGCGCTTCCTCTTAA AGGAGACGGCCAATCAGATCCAGTCCCTGCTGAGCTCGGTGGAAAGCGCGGTGGAGGCCA TCGAAGAGCAGACCAGCCAGATCCGGCAGAACCACAGCAAGCCCAGCCACAGCATGGTGG AGGCCTGGTCTGGGAGTCCGGCTCCCCCCTACACCCCCAACCACAAGTTCGTGGCCACGG ATCAGGGGAAGAACTTCCCGCCTGTCACTTCGGACCCCAAAGAGGAGGGCCTGGAAGCCC AGGTCAGCAGGTTGGCGGAGCTGATAGGACGGCTGGAGAACAGGACCCTGTGGTTTGACC TTCAGCAGCATCTCTTGGATGAAGAAGGCACCAATATGCATCTGCAGCTCGTCCGGCAGG AGATGGCCGTGTGTCCCGAGCAGCTGGGGGAGTTCCTGGGCTCCCTGCGTCAATACTTGC GGGGCACCTCCGGAGCCAGGCACTGCTTCCACGTCACGGCCGTGAGGCTGGCAGACGGTG TCACCTTCGTGGTCTACGAGTTCTGGGAGACAGAGGAGGAGTGGAAGAGGCACCTGCAGA GCCCTGTGTGCAAGGCCTTCCGCCACGTCAAGGTGGACACGCTGAGCCAGCCCGAGGTGC TCTCCCGGATCGCGGTGCCAGCCGCCTGGTGCACCCTGGGCCGCGACTGAGGCCCCATGG ACGAGCCTGCCACCCACCCGGCTCCCTCTGACGAAGGACGACCACTCTTTTCTAGCATCT TTGGTATCCGAGCTCTTTTCCATATACTCCAAATACCAATGTCTCTCCTGCTGTCAGAAG TGAAGGAGGGCCCCCCTAGCTCCCCCCCGCCTTGGTGGCAGAGCACCGTCTGAGCTGCTG GGGCCCTGCTGGAGCCAGAGCGCAGTGGGGATGGGGGGCTTCCTGGAGGCAGCCCCTGCC TCCCCCATCGCATGACCAGCCCCCATGTCCCCGGCCGGCCTGGCCTCAGCAGGACTCCCC CTCTTTCCCCCTCCTGGTTGCCACTCTACCTGGTAGGAGCCGAGACCCTGTAGTGCCCGC CCTAGGCCCGGGCCGAGCCCGCAGGCGGCCGTAGATCCCGCGTAGCCAGTGCCCTGTGAG GCAAGCAGCCCGGGACAGAACCAAATAAAATCCCGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGACGTCTTGGCCTCCCTGGAGACCTTGAATCACTCTGTCCTGAAGGCCATGGGCTACA CCAAGGAGGGGGGTGAGGGGGGAAGCAACGTGGACCAGTTTGTGACGCGCTTCCTCTTAA AGGAGACGGCCAATCAGATCCAGTCCCTGCTGAGCTCGGTGGAAAGCGCGGTGGAGGCCA TCGAAGAGCAGACCAGCCAGATCCGGCAGAACCACAGCAAGCCCAGCCACAGCATGGTGG AGGCCTGGTCTGGGAGTCCGGCTCCCCCCTACACCCCCAACCACAAGTTCGTGGCCACGG ATCAGGGGAAGAACTTCCCGCCTGTCACTTCGGACCCCAAAGAGGAGGGCCTGGAAGCCC AGGTCAGCAGGTTGGCGGAGCTGATAGGACGGCTGGAGAACAGGACCCTGTGGTTTGACC TTCAGCAGCATCTCTTGGATGAAGAAGGCACCAATATGCATCTGCAGCTCGTCCGGCAGG AGATGGCCGTGTGTCCCGAGCAGCTGGGGGAGTTCCTGGGCTCCCTGCGTCAATACTTGC GGGGCACCTCCGGAGCCAGGCACTGCTTCCACGTCACGGCCGTGAGGCTGGCAGACGGTG TCACCTTCGTGGTCTACGAGTTCTGGGAGACAGAGGAGGAGTGGAAGAGGCACCTGCAGA GCCCTGTGTGCAAGGCCTTCCGCCACGTCAAGGTGGACACGCTGAGCCAGCCCGAGGTGC TCTCCCGGATCGCGGTGCCAGCCGCCTGGTGCACCCTGGGCCGCGACTGAGGCCCCATGG ACGAGCCTGCCACCCACCCGGCTCCCTCTGACGAAGGACGACCACTCTTTTCTAGCATCT TTGGTATCCGAGCTCTTTTCCATATACTCCAAATACCAATGTCTCTCCTGCTGTCAGAAG TGAAGGAGGGCCCCCCTAGCTCCCCCCCGCCTTGGTGGCAGAGCACCGTCTGAGCTGCTG GGGCCCTGCTGGAGCCAGAGCGCAGTGGGGATGGGGGGCTTCCTGGAGGCAGCCCCTGCC TCCCCCATCGCATGACCAGCCCCCATGTCCCCGGCCGGCCTGGCCTCAGCAGGACTCCCC CTCTTTCCCCCTCCTGGTTGCCACTCTACCTGGTAGGAGCCGAGACCCTGTAGTGCCCGC CCTAGGCCCGGGCCGAGCCCGCAGGCGGCCGTAGATCCCGCGTAGCCAGTGCCCTGTGAG GCAAGCAGCCCGGGACAGAACCAAATAAAATCCCGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 220-324, - strand, RNAz p=0.924425 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 220-324, - strand, RNAz p=0.924425 |
| Aligned organism(s): 53 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
| 75-206, gnl|bosTau2|chr18 (10888209-10888078) | |
| 75-206, gnl|canFam2|chr29 (39267469-39267613) | |
| 75-206, gnl|canFam2|chr5 (71324383-71324205) | |
| 75-206, gnl|danRer3|chr18 (21247413-21247277) | |
| 75-206, gnl|danRer3|chr19 (44907872-44908016) | |
| 75-206, gnl|dasNov1|scaffold_25803 (9815-9671) | |
| 75-206, gnl|dasNov1|scaffold_78667 (3329-3152) | |
| 75-206, gnl|echTel1|scaffold_233898 (2249-2105) | |
| 75-206, gnl|echTel1|scaffold_242100 (936-767) | |
| 75-206, gnl|fr1|chrUn (145947602-145947745) | |
| 75-206, gnl|fr1|chrUn (168693991-168694153) | |
| 75-206, gnl|galGal2|chr11 (2426138-2425970) | |
| 75-206, gnl|galGal2|chr2 (124040038-124040179) | |
| 75-206, gnl|hg17|chr16 (82581581-82581761) | |
| 75-206, gnl|Hg17|chr16 (82581606-82581737) | |
| 75-206, gnl|hg17|chr8 (91998893-91999037) | |
| 75-206, gnl|loxAfr1|scaffold_274 (5607-5805) | |
| 75-206, gnl|loxAfr1|scaffold_7447 (41689-41545) | |
| 75-206, gnl|mm7|chr4 (14932257-14932113) | |
| 75-206, gnl|mm7|chr8 (118083741-118083903) | |
| 75-206, gnl|Mm7|chr8 (118083752-118083883) | |
| 75-206, gnl|monDom2|scaffold_23 (16703613-16703451) | |
| 75-206, gnl|monDom2|scaffold_3 (75890938-75890794) | |
| 75-206, gnl|oryCun1|scaffold_197467 (12561-12393) | |
| 75-206, gnl|oryCun1|scaffold_211079 (8290-8433) | |
| 75-206, gnl|panTro1|chr18 (77467622-77467802) | |
| 75-206, gnl|panTro1|chr7 (94205999-94206143) | |
| 75-206, gnl|rheMac2|chr20 (82119741-82119921) | |
| 75-206, gnl|rheMac2|chr8 (93560822-93560966) | |
| 75-206, gnl|rn3|chr19 (49714617-49714778) | |
| 75-206, gnl|rn3|chr5 (29526138-29525994) | |
| 75-206, gnl|tetNig1|chr21_random (1705151-1705295) | |
| 75-206, gnl|tetNig1|chrUn_random (18282593-18282755) | |
| 75-206, gnl|xenTro1|scaffold_472 (177389-177560) | |
| 207-324, gnl|bosTau2|chr18 (10885559-10885442) | |
| 207-324, gnl|canFam2|chr5 (71321894-71321614) | |
| 207-324, gnl|dasNov1|scaffold_78667 (1119-826) | |
| 207-324, gnl|galGal2|chr11 (2425208-2424949) | |
| 207-324, gnl|hg17|chr16 (82585316-82585616) | |
| 207-324, gnl|Hg17|chr16 (82585409-82585526) | |
| 207-324, gnl|loxAfr1|scaffold_274 (7063-7376) | |
| 207-324, gnl|mm7|chr8 (118085994-118086266) | |
| 207-324, gnl|Mm7|chr8 (118086088-118086205) | |
| 207-324, gnl|monDom2|scaffold_23 (16702584-16702260) | |
| 207-324, gnl|panTro1|chr18 (77471447-77471747) | |
| 207-324, gnl|rheMac2|chr20 (82123601-82123904) | |
| 207-324, gnl|rn3|chr19 (49717118-49717391) | |
| 458-571, gnl|bosTau2|chr18 (10881779-10881666) | |
| 458-571, gnl|Hg17|chr16 (82589310-82589423) | |
| 458-571, gnl|Mm7|chr8 (118089453-118089566) | |
| 738-1236, gnl|bosTau2|chr18 (10876009-10875517) | |
| 738-1236, gnl|Hg17|chr16 (82593420-82593874) | |
| 738-1236, gnl|Mm7|chr8 (118093322-118093814) |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 75-206, gnl|bosTau2|chr18 (10888209-10888078) | |
| 75-206, gnl|canFam2|chr29 (39267469-39267613) | |
| 75-206, gnl|canFam2|chr5 (71324383-71324205) | |
| 75-206, gnl|danRer3|chr18 (21247413-21247277) | |
| 75-206, gnl|danRer3|chr19 (44907872-44908016) | |
| 75-206, gnl|dasNov1|scaffold_25803 (9815-9671) | |
| 75-206, gnl|dasNov1|scaffold_78667 (3329-3152) | |
| 75-206, gnl|echTel1|scaffold_233898 (2249-2105) | |
| 75-206, gnl|echTel1|scaffold_242100 (936-767) | |
| 75-206, gnl|fr1|chrUn (145947602-145947745) | |
| 75-206, gnl|fr1|chrUn (168693991-168694153) | |
| 75-206, gnl|galGal2|chr11 (2426138-2425970) | |
| 75-206, gnl|galGal2|chr2 (124040038-124040179) | |
| 75-206, gnl|hg17|chr16 (82581581-82581761) | |
| 75-206, gnl|Hg17|chr16 (82581606-82581737) | |
| 75-206, gnl|hg17|chr8 (91998893-91999037) | |
| 75-206, gnl|loxAfr1|scaffold_274 (5607-5805) | |
| 75-206, gnl|loxAfr1|scaffold_7447 (41689-41545) | |
| 75-206, gnl|mm7|chr4 (14932257-14932113) | |
| 75-206, gnl|mm7|chr8 (118083741-118083903) | |
| 75-206, gnl|Mm7|chr8 (118083752-118083883) | |
| 75-206, gnl|monDom2|scaffold_23 (16703613-16703451) | |
| 75-206, gnl|monDom2|scaffold_3 (75890938-75890794) | |
| 75-206, gnl|oryCun1|scaffold_197467 (12561-12393) | |
| 75-206, gnl|oryCun1|scaffold_211079 (8290-8433) | |
| 75-206, gnl|panTro1|chr18 (77467622-77467802) | |
| 75-206, gnl|panTro1|chr7 (94205999-94206143) | |
| 75-206, gnl|rheMac2|chr20 (82119741-82119921) | |
| 75-206, gnl|rheMac2|chr8 (93560822-93560966) | |
| 75-206, gnl|rn3|chr19 (49714617-49714778) | |
| 75-206, gnl|rn3|chr5 (29526138-29525994) | |
| 75-206, gnl|tetNig1|chr21_random (1705151-1705295) | |
| 75-206, gnl|tetNig1|chrUn_random (18282593-18282755) | |
| 75-206, gnl|xenTro1|scaffold_472 (177389-177560) | |
| 207-324, gnl|bosTau2|chr18 (10885559-10885442) | |
| 207-324, gnl|canFam2|chr5 (71321894-71321614) | |
| 207-324, gnl|dasNov1|scaffold_78667 (1119-826) | |
| 207-324, gnl|galGal2|chr11 (2425208-2424949) | |
| 207-324, gnl|hg17|chr16 (82585316-82585616) | |
| 207-324, gnl|Hg17|chr16 (82585409-82585526) | |
| 207-324, gnl|loxAfr1|scaffold_274 (7063-7376) | |
| 207-324, gnl|mm7|chr8 (118085994-118086266) | |
| 207-324, gnl|Mm7|chr8 (118086088-118086205) | |
| 207-324, gnl|monDom2|scaffold_23 (16702584-16702260) | |
| 207-324, gnl|panTro1|chr18 (77471447-77471747) | |
| 207-324, gnl|rheMac2|chr20 (82123601-82123904) | |
| 207-324, gnl|rn3|chr19 (49717118-49717391) | |
| 458-571, gnl|bosTau2|chr18 (10881779-10881666) | |
| 458-571, gnl|Hg17|chr16 (82589310-82589423) | |
| 458-571, gnl|Mm7|chr8 (118089453-118089566) | |
| 738-1236, gnl|bosTau2|chr18 (10876009-10875517) | |
| 738-1236, gnl|Hg17|chr16 (82593420-82593874) | |
| 738-1236, gnl|Mm7|chr8 (118093322-118093814) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fhi (0.169578) | |
| ebs (0.118301) |