Non-Coding RNA Search

Ss1.1-Pig2-143I02.5

Sequence:


               
               GAAAGAGGCCGCTACAAACTGCTCCTTCAGCCAGTGCTCAGCCAGGCGCTATGGCCGCAG
AAACAGCCCCTTCAAAAGACCCCAGAGACCCCAGAGCCAGCCCCAAAGTCAGGGGCCTTA
AGACAGACCTGAAGACTCGCTCAGGTGGAAAGCCCGCAGGCCACCAGAAGGCCATTCCCA
AAGCTCACCTAACTTTCGTCATCGACTGTGCTCACGGGAAACGGATCTCCCTGACAGCAC
CCCCAGTGCCACCCCGAGCCCCTAGTCCCAACCCAGGACCTGTCATCCCTCCAATGAAGA
CCTACATCTTGTTCTGTGGGGAAAGCCGGCCCCCCCATCAGACTCCAGAGGCCCCCCTGG
ATGAGGGAGGCCTTGCCTGGGCCAGGGGCCCCCTGCCACCCTGCACAGGGAGTGCAGCCC
CAGCTTCCTCCCCTGCCAGCCCACTCTGCCTCCAGGAGGCTCCTGAAGTCAAGGGGAGCC
CTGCCAAGAGGTCTTCAGCTTGGGGAACGGTCTTGGGCTCCCTCAAAGCCCTCTCCTCCT
GCGTCTGTGCGCAGGCTGATTAACCGGAAGAGCCTGGCCGAGGGAGGAAGGGGGTGACAC
CCAGGAGCCCGTCCCTCCTCCCCAGCCAAGAGGAAATCTCTTGTGGCTGGGCCAAGAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAGAGGCCGCTACAAACTGCTCCTTCAGCCAGTGCTCAGCCAGGCGCTATGGCCGCAG
AAACAGCCCCTTCAAAAGACCCCAGAGACCCCAGAGCCAGCCCCAAAGTCAGGGGCCTTA
AGACAGACCTGAAGACTCGCTCAGGTGGAAAGCCCGCAGGCCACCAGAAGGCCATTCCCA
AAGCTCACCTAACTTTCGTCATCGACTGTGCTCACGGGAAACGGATCTCCCTGACAGCAC
CCCCAGTGCCACCCCGAGCCCCTAGTCCCAACCCAGGACCTGTCATCCCTCCAATGAAGA
CCTACATCTTGTTCTGTGGGGAAAGCCGGCCCCCCCATCAGACTCCAGAGGCCCCCCTGG
ATGAGGGAGGCCTTGCCTGGGCCAGGGGCCCCCTGCCACCCTGCACAGGGAGTGCAGCCC
CAGCTTCCTCCCCTGCCAGCCCACTCTGCCTCCAGGAGGCTCCTGAAGTCAAGGGGAGCC
CTGCCAAGAGGTCTTCAGCTTGGGGAACGGTCTTGGGCTCCCTCAAAGCCCTCTCCTCCT
GCGTCTGTGCGCAGGCTGATTAACCGGAAGAGCCTGGCCGAGGGAGGAAGGGGGTGACAC
CCAGGAGCCCGTCCCTCCTCCCCAGCCAAGAGGAAATCTCTTGTGGCTGGGCCAAGAAAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8NEQ6_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8NEQ6_HUMAN

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               171-542, - strand, RNAz p=0.905999
               

               
               556-660, - strand, RNAz p=0.934515
               

               
               558-660, - strand, RNAz p=0.98347

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               171-542, - strand, RNAz p=0.905999
               

               
               556-660, - strand, RNAz p=0.934515
               

               
               558-660, - strand, RNAz p=0.98347

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               142-660, gnl|bosTau2|chr2 (86253904-86253370)
               

               
               142-660, gnl|canFam2|chr2 (84536431-84535921)
               

               
               142-660, gnl|dasNov1|scaffold_55754 (10397-10889)
               

               
               142-660, gnl|hg17|chr1 (16077711-16078187)
               

               
               142-660, gnl|Hg17|chr1 (16077717-16078246)
               

               
               142-660, gnl|loxAfr1|scaffold_36086 (4937-5439)
               

               
               142-660, gnl|mm7|chr4 (140811904-140811427)
               

               
               142-660, gnl|Mm7|chr4 (140811900-140811425)
               

               
               142-660, gnl|monDom2|scaffold_109 (3185805-3185341)
               

               
               142-660, gnl|oryCun1|scaffold_214116 (167365-167839)
               

               
               142-660, gnl|panTro1|chr1 (16243773-16244249)
               

               
               142-660, gnl|rheMac2|chr1 (18809511-18809987)
               

               
               142-660, gnl|rn3|chr5 (160335978-160335529)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               142-660, gnl|bosTau2|chr2 (86253904-86253370)
               

               
               142-660, gnl|canFam2|chr2 (84536431-84535921)
               

               
               142-660, gnl|dasNov1|scaffold_55754 (10397-10889)
               

               
               142-660, gnl|hg17|chr1 (16077711-16078187)
               

               
               142-660, gnl|Hg17|chr1 (16077717-16078246)
               

               
               142-660, gnl|loxAfr1|scaffold_36086 (4937-5439)
               

               
               142-660, gnl|mm7|chr4 (140811904-140811427)
               

               
               142-660, gnl|Mm7|chr4 (140811900-140811425)
               

               
               142-660, gnl|monDom2|scaffold_109 (3185805-3185341)
               

               
               142-660, gnl|oryCun1|scaffold_214116 (167365-167839)
               

               
               142-660, gnl|panTro1|chr1 (16243773-16244249)
               

               
               142-660, gnl|rheMac2|chr1 (18809511-18809987)
               

               
               142-660, gnl|rn3|chr5 (160335978-160335529)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pla (0.133672)
               

               
               ute (0.132784)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)
               

               
               ute (0.132784)

	171-542, - strand, RNAz p=0.905999
	556-660, - strand, RNAz p=0.934515
	558-660, - strand, RNAz p=0.98347

	142-660, gnl\|bosTau2\|chr2 (86253904-86253370)
	142-660, gnl\|canFam2\|chr2 (84536431-84535921)
	142-660, gnl\|dasNov1\|scaffold_55754 (10397-10889)
	142-660, gnl\|hg17\|chr1 (16077711-16078187)
	142-660, gnl\|Hg17\|chr1 (16077717-16078246)
	142-660, gnl\|loxAfr1\|scaffold_36086 (4937-5439)
	142-660, gnl\|mm7\|chr4 (140811904-140811427)
	142-660, gnl\|Mm7\|chr4 (140811900-140811425)
	142-660, gnl\|monDom2\|scaffold_109 (3185805-3185341)
	142-660, gnl\|oryCun1\|scaffold_214116 (167365-167839)
	142-660, gnl\|panTro1\|chr1 (16243773-16244249)
	142-660, gnl\|rheMac2\|chr1 (18809511-18809987)
	142-660, gnl\|rn3\|chr5 (160335978-160335529)