Non-Coding RNA Search

Ss1.1-Pig2-143K02.5

Sequence:


               
               CTGGACAGCAGTACATGGGACAGAGGCCGTGGTACATCATCCTCGTTTTCCTCCGGCCAG
CGATCTGACAAGGGACACAGGGTCCAACCGCTGGACCCCGATCTCTTTGCCCCAAGCTTC
CTGGGACCTTTCCTCGGACTCCTTTGCCCATCCAGCATCCCTGCTACCCCCAGGCCCCCT
CAGCTACAGTTTGCAGTTTCCCCGTGGCAAGGAGCCATGAGGTCCCGGCTCTTGCTTTCT
GTGCCCCATCTGCCCACAATTCGGGAGACCTCAGAGGAGATGCTGCCTGTGGGGCCCGGA
GAGGAACCCCCTGCCTCCCCCAGCCTGGATGACTACGTGAGGTCCATTTGTCAGCTGGCA
CAGCCCACCTCAGTGCTGGACGAGGCTGCAGCCTGGGCCCGGCCTCGTAGACCCCACCGA
CCAGGCCGTTCCTGCGAGAAGAGCCGCTCTGATGGGTCCCTTCAGGACATCACCACCCAC
TTCAGCGGCCAGCAGCCTGTGCTGCCAAGGGCCGGCCCGGCTGACCCCCTGGACTGGCTC
TTTGGGGAGTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGACAGCAGTACATGGGACAGAGGCCGTGGTACATCATCCTCGTTTTCCTCCGGCCAG
CGATCTGACAAGGGACACAGGGTCCAACCGCTGGACCCCGATCTCTTTGCCCCAAGCTTC
CTGGGACCTTTCCTCGGACTCCTTTGCCCATCCAGCATCCCTGCTACCCCCAGGCCCCCT
CAGCTACAGTTTGCAGTTTCCCCGTGGCAAGGAGCCATGAGGTCCCGGCTCTTGCTTTCT
GTGCCCCATCTGCCCACAATTCGGGAGACCTCAGAGGAGATGCTGCCTGTGGGGCCCGGA
GAGGAACCCCCTGCCTCCCCCAGCCTGGATGACTACGTGAGGTCCATTTGTCAGCTGGCA
CAGCCCACCTCAGTGCTGGACGAGGCTGCAGCCTGGGCCCGGCCTCGTAGACCCCACCGA
CCAGGCCGTTCCTGCGAGAAGAGCCGCTCTGATGGGTCCCTTCAGGACATCACCACCCAC
TTCAGCGGCCAGCAGCCTGTGCTGCCAAGGGCCGGCCCGGCTGACCCCCTGGACTGGCTC
TTTGGGGAGTCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|38569770|gb|AAR24403.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|38569770|gb|AAR24403.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               169-552, gnl|bosTau2|chr28 (33184214-33183828)
               

               
               169-552, gnl|Hg17|chr10 (44793534-44793149)
               

               
               169-552, gnl|Mm7|chr6 (116677984-116678367)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               169-552, gnl|bosTau2|chr28 (33184214-33183828)
               

               
               169-552, gnl|Hg17|chr10 (44793534-44793149)
               

               
               169-552, gnl|Mm7|chr6 (116677984-116678367)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               eru (0.240096)
               

               
               mas (0.210305)
               

               
               cov (0.132153)
               

               
               eep (0.122564)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.240096)
               

               
               mas (0.210305)
               

               
               cov (0.132153)
               

               
               eep (0.122564)

	169-552, gnl\|bosTau2\|chr28 (33184214-33183828)
	169-552, gnl\|Hg17\|chr10 (44793534-44793149)
	169-552, gnl\|Mm7\|chr6 (116677984-116678367)