Ss1.1-Pig2-143K22.5
|
GGATCCTCAAGCCCTGGCCTGCACCCCAGCCTCTCCTCTAGACTCACAGCCTCCAGCTTC
CCCCCAAGACTCAGAAGCCCTGGACTTTGACATCCCTTCCTCCTCCCTGGCACCCCGGAC
TCCGGACTCTGCCTTGGCCTCTGAGACCCTCGCCTCTCCCCAGTCCCTGCCTCCAGCCTC
ACCGCTGCAGGAGGACCGGGGAGAGGGGGACCTGGGGAAGGCCGTGGAGCTGGCACAGGC
CCTGAAGGGGGAGAAAGCGGAAGGGGGAGCCATGCTGGATCTGGTGGGATCCATTCTTCG
GGGCTGTGTCCCTGGAGTGTACCGAGTCCAAACTGTGCCCTCTGCCCGGCGCCCCGTGGT
CAAGTTCTGCCATCGGCCTTCAGGTCTCCACGGTGACGTCTCCCTCAGTAACCGGCTGGC
TCTGCACAACTCCCGCTTCTTGAGTCTCTGCTCGGAGCTGGATGGGCGAGTGCGGCCCCT
CGTGTATACTGTGCGCTGCTGGGCTCAGGGCCGAGGGCTGTCAGGGAGTGGCCCACTTCT
CAGTAACTATGCCCTGACCTTGCTCGTGATCTATTTCCTTCAGACCAGGGACCCTCCAGT
GTTGCCCACTGTTTCCCAGCTCACCCAGAAAGCAGGTGAGGGTGAACAGGTGGAGGTTGA
TGGCTGGGACTGTAGTTTCCCCAGGGACGCCTCGAGACTGGAGCCCAGCACCAATAAGGA
GCCCCTGGGTTCCCTGCTGGCCCAGTTCTTCTCCTGCGTCGCTTGCTGGGATCTTCGTGG
CTCACTGCTGTCCCTGCGGGAGGGTCAGGCACTGCCTGTGGCAGGGGGCCTGCCCTCTAA
TCTCTGGGAGGGTCTGCGCCTCGGTCCCATGAATCTCCAGGACCCCTTTGACTTGAGTCA
CAATGTGGCAGCCAATGTGACCAGCCGGGTGGCTGGGCGGCTACAGAACTGCTGCCGAGC
GGCAGCCAATTATTGCCGGAGCCTCCAGTACCAGCGCCGTTCCTCCCGGGGTCGGGACTG
GGGGCTGCTCCCCCTTGTGCAGCCCAGCTCGCCTAGCTCCCTGCTGTCTGCAACACCCAT
CCCTTTACCCCCCGCTCCCTTCACCCAGCTCACTGCCGCCCTGGTCCAGGTGTTAAGGGA
GGCATTGGGGTGCCATATAGAACAGGGAACCAAGAGGCTGCGGTCAGAGGGAGGTGAAAC
GGGGGAGTCTCCCCAGGGAGGGACAAGCAAAAGACTGAAAGTAGATGGGCAGAGAAAAAG
CTGTGCAGCGGGGCAGGAGGAGCAGCAGGGCTGTGCGGGGGATCACAGTGAAGACGGGGT
AGAAGAAATGGTCGTAGAGGTTGGAGAGTCGGTGCAGGACTGGGCCATGCGGAGCCCAGG
GCAGCCGGCGGAGCTTCCCCGGACGACCGGAAAGCATCTGGCCACTGGGGAAGAGGTGCA
GACGGTGGCGCCGGCAGAGCAGGGGCCCAAAGGACC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGATCCTCAAGCCCTGGCCTGCACCCCAGCCTCTCCTCTAGACTCACAGCCTCCAGCTTC
CCCCCAAGACTCAGAAGCCCTGGACTTTGACATCCCTTCCTCCTCCCTGGCACCCCGGAC
TCCGGACTCTGCCTTGGCCTCTGAGACCCTCGCCTCTCCCCAGTCCCTGCCTCCAGCCTC
ACCGCTGCAGGAGGACCGGGGAGAGGGGGACCTGGGGAAGGCCGTGGAGCTGGCACAGGC
CCTGAAGGGGGAGAAAGCGGAAGGGGGAGCCATGCTGGATCTGGTGGGATCCATTCTTCG
GGGCTGTGTCCCTGGAGTGTACCGAGTCCAAACTGTGCCCTCTGCCCGGCGCCCCGTGGT
CAAGTTCTGCCATCGGCCTTCAGGTCTCCACGGTGACGTCTCCCTCAGTAACCGGCTGGC
TCTGCACAACTCCCGCTTCTTGAGTCTCTGCTCGGAGCTGGATGGGCGAGTGCGGCCCCT
CGTGTATACTGTGCGCTGCTGGGCTCAGGGCCGAGGGCTGTCAGGGAGTGGCCCACTTCT
CAGTAACTATGCCCTGACCTTGCTCGTGATCTATTTCCTTCAGACCAGGGACCCTCCAGT
GTTGCCCACTGTTTCCCAGCTCACCCAGAAAGCAGGTGAGGGTGAACAGGTGGAGGTTGA
TGGCTGGGACTGTAGTTTCCCCAGGGACGCCTCGAGACTGGAGCCCAGCACCAATAAGGA
GCCCCTGGGTTCCCTGCTGGCCCAGTTCTTCTCCTGCGTCGCTTGCTGGGATCTTCGTGG
CTCACTGCTGTCCCTGCGGGAGGGTCAGGCACTGCCTGTGGCAGGGGGCCTGCCCTCTAA
TCTCTGGGAGGGTCTGCGCCTCGGTCCCATGAATCTCCAGGACCCCTTTGACTTGAGTCA
CAATGTGGCAGCCAATGTGACCAGCCGGGTGGCTGGGCGGCTACAGAACTGCTGCCGAGC
GGCAGCCAATTATTGCCGGAGCCTCCAGTACCAGCGCCGTTCCTCCCGGGGTCGGGACTG
GGGGCTGCTCCCCCTTGTGCAGCCCAGCTCGCCTAGCTCCCTGCTGTCTGCAACACCCAT
CCCTTTACCCCCCGCTCCCTTCACCCAGCTCACTGCCGCCCTGGTCCAGGTGTTAAGGGA
GGCATTGGGGTGCCATATAGAACAGGGAACCAAGAGGCTGCGGTCAGAGGGAGGTGAAAC
GGGGGAGTCTCCCCAGGGAGGGACAAGCAAAAGACTGAAAGTAGATGGGCAGAGAAAAAG
CTGTGCAGCGGGGCAGGAGGAGCAGCAGGGCTGTGCGGGGGATCACAGTGAAGACGGGGT
AGAAGAAATGGTCGTAGAGGTTGGAGAGTCGGTGCAGGACTGGGCCATGCGGAGCCCAGG
GCAGCCGGCGGAGCTTCCCCGGACGACCGGAAAGCATCTGGCCACTGGGGAAGAGGTGCA
GACGGTGGCGCCGGCAGAGCAGGGGCCCAAAGGACC
|
|
gi|61837067|ref|XP_586338.1| |
Protein identifier
|
gi|61837067|ref|XP_586338.1| |
|
40-316, - strand, RNAz p=0.995801 |
|
963-1172, - strand, RNAz p=0.980759 |
|
1068-1164, + strand, RNAz p=0.989341 |
|
1293-1476, - strand, RNAz p=0.85262 |
|
1365-1476, - strand, RNAz p=0.692536 |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
40-316, - strand, RNAz p=0.995801 |
|
963-1172, - strand, RNAz p=0.980759 |
|
1068-1164, + strand, RNAz p=0.989341 |
|
1293-1476, - strand, RNAz p=0.85262 |
|
1365-1476, - strand, RNAz p=0.692536 |
|
5' of AK125351, - |
|
5' of AK125351, - |
Human gene identifier and UTR site,
human gene reading direction
|
5' of AK125351, - |
|
5' of AK125351, - |
|
1-415, gnl|bosTau2|chr29 (32036017-32035603) |
|
1-415, gnl|Hg17|chr11 (62103022-62102608) |
|
1-415, gnl|Mm7|chr19 (8642571-8642985) |
| |
|
522-637, gnl|bosTau2|chr29 (32034482-32034367) |
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522-637, gnl|Hg17|chr11 (62101068-62100953) |
|
522-637, gnl|Mm7|chr19 (8644423-8644538) |
| |
|
963-1476, gnl|bosTau2|chr29 (32033732-32033213) |
|
963-1476, gnl|canFam2|chr18 (57087361-57086946) |
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963-1476, gnl|danRer3|chr19 (54995699-54995403) |
|
963-1476, gnl|dasNov1|scaffold_200353 (3547-3137) |
|
963-1476, gnl|galGal2|chrUn (26391628-26391228) |
|
963-1476, gnl|hg17|chr11 (62099512-62099924) |
|
963-1476, gnl|Hg17|chr11 (62100288-62099539) |
|
963-1476, gnl|loxAfr1|scaffold_13886 (30908-31320) |
|
963-1476, gnl|mm7|chr19 (8645951-8645566) |
|
963-1476, gnl|Mm7|chr19 (8645493-8645922) |
|
963-1476, gnl|monDom2|scaffold_150 (845903-846288) |
|
963-1476, gnl|oryCun1|scaffold_210230 (101046-100640) |
|
963-1476, gnl|panTro1|chr9 (63095067-63095479) |
|
963-1476, gnl|rheMac2|chr14 (11517450-11517050) |
|
963-1476, gnl|rn3|chr1 (211798019-211797637) |
|
963-1476, gnl|xenTro1|scaffold_1376 (59657-59226) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-415, gnl|bosTau2|chr29 (32036017-32035603) |
|
1-415, gnl|Hg17|chr11 (62103022-62102608) |
|
1-415, gnl|Mm7|chr19 (8642571-8642985) |
| |
|
522-637, gnl|bosTau2|chr29 (32034482-32034367) |
|
522-637, gnl|Hg17|chr11 (62101068-62100953) |
|
522-637, gnl|Mm7|chr19 (8644423-8644538) |
| |
|
963-1476, gnl|bosTau2|chr29 (32033732-32033213) |
|
963-1476, gnl|canFam2|chr18 (57087361-57086946) |
|
963-1476, gnl|danRer3|chr19 (54995699-54995403) |
|
963-1476, gnl|dasNov1|scaffold_200353 (3547-3137) |
|
963-1476, gnl|galGal2|chrUn (26391628-26391228) |
|
963-1476, gnl|hg17|chr11 (62099512-62099924) |
|
963-1476, gnl|Hg17|chr11 (62100288-62099539) |
|
963-1476, gnl|loxAfr1|scaffold_13886 (30908-31320) |
|
963-1476, gnl|mm7|chr19 (8645951-8645566) |
|
963-1476, gnl|Mm7|chr19 (8645493-8645922) |
|
963-1476, gnl|monDom2|scaffold_150 (845903-846288) |
|
963-1476, gnl|oryCun1|scaffold_210230 (101046-100640) |
|
963-1476, gnl|panTro1|chr9 (63095067-63095479) |
|
963-1476, gnl|rheMac2|chr14 (11517450-11517050) |
|
963-1476, gnl|rn3|chr1 (211798019-211797637) |
|
963-1476, gnl|xenTro1|scaffold_1376 (59657-59226) |
|
jej (0.197844) |
|
ese (0.126502) |
|
jej (0.197844) |
|
ese (0.126502) |
