Non-Coding RNA Search

Ss1.1-Pig2-143M23.5

Sequence:


               
               CAGCCTCCTTCTGGATGCTGTAGAGGCCACAGAATTTAGTGCATCTGTGGTGCCAGGCAC
TGTTCTAGGTATTGGAGATGCTGCTGGGCACAGACCGACACAACTCCTGGTCCCTGTCAC
AAACATCCTAGTTAGGGAGAGAGCAACCAATGATGATCATAGGCAAACAAGAGAGTGTTA
GAAGAGCATGAGGAGGTAGAGGAAGTACCACAGTTCCGAGTGACTAAGCAAATCAATGGT
CCCCACTGCACAGAATAGGGCCTGCCCGAGAGGGGACTCAGTTTACCTGTCTTGAAGGGA
GGAATCTGGCAGCAGTGAAGTAGGTGAGGAGATGGGAAAGACTGGACTGGGCGTAGCAGG
AGAGGAGGGCCAGGAGGAGAGTAGTTTGGGGCTTGGCTGAACAGGTGGCCCAGGGCCTGG
GGCTGCCACGGCGCCGTCTCTGCCCGCCTGCCCAGGTGCTGGACCTCAGCCACAACGAGC
TGTCCTTCGTGCCCCCCGACCTGCCTGAAGCCCTGGAGGAACTGCACCTGCAGGGCAACC
GCATCAGCCACGTGGGCCCCGAAGCCTTCATCAGCACGCCTCGCCTGCGTGCCCTCTTCC
TCAGGGCCAACAGGCTTCACATGACCAGCATCTCGCCAGAGGCCTTCCTGGGCCTCCCGC
ATCTGCGCATGGTGGACACAACGGGTAACCCTGAGCAGGTCCTGGTCCGGCTGCCGCCCA
TGGTCCCACGTCGGCCACGGTCAGTGGGTGCCTAAGCCTGGAGGGGCCCAGGAGAGCAGC
CCAGACCCCTGGGGTTCTGCTGGGCCATGGACTAAGAAGACTAAGACTCCCCTGTGGCCT
CAATCTGGCTCTCCCAGGCCTGGAGAGCTGGGCCTGCCTAACCTGTGCTGGCCAGGATGC
TGGGACAGGGTGCCATCTCAATACACAGAGAGCTCGGGGAGAGACTGAAGCCTTCAACTC
GCACAACAGGTGTTCAGACCACTCCCATCCCGTGAGGATGGGGATGAAACAATAAAGCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCCTCCTTCTGGATGCTGTAGAGGCCACAGAATTTAGTGCATCTGTGGTGCCAGGCAC
TGTTCTAGGTATTGGAGATGCTGCTGGGCACAGACCGACACAACTCCTGGTCCCTGTCAC
AAACATCCTAGTTAGGGAGAGAGCAACCAATGATGATCATAGGCAAACAAGAGAGTGTTA
GAAGAGCATGAGGAGGTAGAGGAAGTACCACAGTTCCGAGTGACTAAGCAAATCAATGGT
CCCCACTGCACAGAATAGGGCCTGCCCGAGAGGGGACTCAGTTTACCTGTCTTGAAGGGA
GGAATCTGGCAGCAGTGAAGTAGGTGAGGAGATGGGAAAGACTGGACTGGGCGTAGCAGG
AGAGGAGGGCCAGGAGGAGAGTAGTTTGGGGCTTGGCTGAACAGGTGGCCCAGGGCCTGG
GGCTGCCACGGCGCCGTCTCTGCCCGCCTGCCCAGGTGCTGGACCTCAGCCACAACGAGC
TGTCCTTCGTGCCCCCCGACCTGCCTGAAGCCCTGGAGGAACTGCACCTGCAGGGCAACC
GCATCAGCCACGTGGGCCCCGAAGCCTTCATCAGCACGCCTCGCCTGCGTGCCCTCTTCC
TCAGGGCCAACAGGCTTCACATGACCAGCATCTCGCCAGAGGCCTTCCTGGGCCTCCCGC
ATCTGCGCATGGTGGACACAACGGGTAACCCTGAGCAGGTCCTGGTCCGGCTGCCGCCCA
TGGTCCCACGTCGGCCACGGTCAGTGGGTGCCTAAGCCTGGAGGGGCCCAGGAGAGCAGC
CCAGACCCCTGGGGTTCTGCTGGGCCATGGACTAAGAAGACTAAGACTCCCCTGTGGCCT
CAATCTGGCTCTCCCAGGCCTGGAGAGCTGGGCCTGCCTAACCTGTGCTGGCCAGGATGC
TGGGACAGGGTGCCATCTCAATACACAGAGAGCTCGGGGAGAGACTGAAGCCTTCAACTC
GCACAACAGGTGTTCAGACCACTCCCATCCCGTGAGGATGGGGATGAAACAATAAAGCCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|51474988|ref|XP_496290.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|51474988|ref|XP_496290.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               238-353, - strand, RNAz p=0.506361
               

               
               843-958, + strand, RNAz p=0.922973

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               238-353, - strand, RNAz p=0.506361
               

               
               843-958, + strand, RNAz p=0.922973

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               238-605, gnl|bosTau2|chr7 (7878667-7879032)
               

               
               238-605, gnl|Hg17|chr19 (13904113-13903776)
               

               
               238-605, gnl|Mm7|chr8 (82714068-82714431)
               


               
               804-982, gnl|bosTau2|chr7 (7879323-7879496)
               

               
               804-982, gnl|Mm7|chr8 (82714678-82714840)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               238-605, gnl|bosTau2|chr7 (7878667-7879032)
               

               
               238-605, gnl|Hg17|chr19 (13904113-13903776)
               

               
               238-605, gnl|Mm7|chr8 (82714068-82714431)
               


               
               804-982, gnl|bosTau2|chr7 (7879323-7879496)
               

               
               804-982, gnl|Mm7|chr8 (82714678-82714840)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nco (0.161734)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)

	238-353, - strand, RNAz p=0.506361
	843-958, + strand, RNAz p=0.922973

	238-605, gnl\|bosTau2\|chr7 (7878667-7879032)
	238-605, gnl\|Hg17\|chr19 (13904113-13903776)
	238-605, gnl\|Mm7\|chr8 (82714068-82714431)

	804-982, gnl\|bosTau2\|chr7 (7879323-7879496)
	804-982, gnl\|Mm7\|chr8 (82714678-82714840)