Non-Coding RNA Search

Ss1.1-Pig2-143P04.5

Sequence:


               
               GACCCAAATAGTTTAACTACCATTTATTGGGTACTGTGCTGGGATAAACACTTTATTCAC
TTTCTCTGCTTTTACCACAATCCTTGGAAAAGCTGTTTACTTCTGTTTTGCGGATGAGGA
AACTGAAACACAACATAGTCACTTGCCTGAGGGCACATAGCTAGTCAATGGCAGAGCTGG
AAACCCAGGCCTTTCAGAATCCAAAGCCAGGCTCTTCATCATGTCACAGTGCCTTGCAGA
CGACTTGCCCAAGGTCATAATGCAGGGCAGTGGTTGGAGTCCAGACGGGCTTTTTCCCTT
ACCAGACCTAAGCCTCACGGCCCCTGGGAAAGTGCCCCGCCAGTCCCTAGCCCTAAACCT
CAGGTCCCGAAGTGGGACCATTAAGCTCCTGACTGATGCAGGCTCAGCCCCCAGCCCTTC
TGCAGGTCCTGCACCTTTGCCTCATCCTCCCAGTCTCAGAGCTCAGGGTCTGGCCTCTCG
CTCTGCTGCCTCCCCCTAACCTCTCCGGCTTCCCCTGGGTTTTATTACCTCCTTGCAGTC
CATTTTCAGATCCTGTCCATTGATCTCCACCCGCACAATGATCACCTCATAATACCACTC
CCGCCGGATGGGTGTGTACCAGAGGCTGCCCGTGTACAGCGAGTGGTCGATACCCCCGAT
GATCTAGAGGGAAAAAGAGACAGTACCCAGGTCCTGACACAGAAGGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACCCAAATAGTTTAACTACCATTTATTGGGTACTGTGCTGGGATAAACACTTTATTCAC
TTTCTCTGCTTTTACCACAATCCTTGGAAAAGCTGTTTACTTCTGTTTTGCGGATGAGGA
AACTGAAACACAACATAGTCACTTGCCTGAGGGCACATAGCTAGTCAATGGCAGAGCTGG
AAACCCAGGCCTTTCAGAATCCAAAGCCAGGCTCTTCATCATGTCACAGTGCCTTGCAGA
CGACTTGCCCAAGGTCATAATGCAGGGCAGTGGTTGGAGTCCAGACGGGCTTTTTCCCTT
ACCAGACCTAAGCCTCACGGCCCCTGGGAAAGTGCCCCGCCAGTCCCTAGCCCTAAACCT
CAGGTCCCGAAGTGGGACCATTAAGCTCCTGACTGATGCAGGCTCAGCCCCCAGCCCTTC
TGCAGGTCCTGCACCTTTGCCTCATCCTCCCAGTCTCAGAGCTCAGGGTCTGGCCTCTCG
CTCTGCTGCCTCCCCCTAACCTCTCCGGCTTCCCCTGGGTTTTATTACCTCCTTGCAGTC
CATTTTCAGATCCTGTCCATTGATCTCCACCCGCACAATGATCACCTCATAATACCACTC
CCGCCGGATGGGTGTGTACCAGAGGCTGCCCGTGTACAGCGAGTGGTCGATACCCCCGAT
GATCTAGAGGGAAAAAGAGACAGTACCCAGGTCCTGACACAGAAGGAC

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               39-264, gnl|bosTau2|chr15 (13566793-13567016)
               

               
               39-264, gnl|canFam2|chr5 (19318523-19318038)
               

               
               39-264, gnl|dasNov1|scaffold_4916 (59275-59772)
               

               
               39-264, gnl|hg17|chr11 (116668495-116668941)
               

               
               39-264, gnl|Hg17|chr11 (116668511-116668731)
               

               
               39-264, gnl|mm7|chr9 (45815776-45815412)
               

               
               39-264, gnl|Mm7|chr9 (45815914-45815553)
               

               
               39-264, gnl|monDom2|scaffold_2 (121997875-121997472)
               

               
               39-264, gnl|panTro1|chr9 (118670647-118671093)
               

               
               39-264, gnl|rheMac2|chr14 (115693582-115694031)
               

               
               39-264, gnl|rn3|chr8 (48845574-48845169)
               


               
               354-708, gnl|bosTau2|chr15 (13567070-13567423)
               

               
               354-708, gnl|Hg17|chr11 (116668803-116669160)
               

               
               354-708, gnl|Mm7|chr9 (45815506-45815192)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               39-264, gnl|bosTau2|chr15 (13566793-13567016)
               

               
               39-264, gnl|canFam2|chr5 (19318523-19318038)
               

               
               39-264, gnl|dasNov1|scaffold_4916 (59275-59772)
               

               
               39-264, gnl|hg17|chr11 (116668495-116668941)
               

               
               39-264, gnl|Hg17|chr11 (116668511-116668731)
               

               
               39-264, gnl|mm7|chr9 (45815776-45815412)
               

               
               39-264, gnl|Mm7|chr9 (45815914-45815553)
               

               
               39-264, gnl|monDom2|scaffold_2 (121997875-121997472)
               

               
               39-264, gnl|panTro1|chr9 (118670647-118671093)
               

               
               39-264, gnl|rheMac2|chr14 (115693582-115694031)
               

               
               39-264, gnl|rn3|chr8 (48845574-48845169)
               


               
               354-708, gnl|bosTau2|chr15 (13567070-13567423)
               

               
               354-708, gnl|Hg17|chr11 (116668803-116669160)
               

               
               354-708, gnl|Mm7|chr9 (45815506-45815192)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ton (0.1755)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.1755)

	39-264, gnl\|bosTau2\|chr15 (13566793-13567016)
	39-264, gnl\|canFam2\|chr5 (19318523-19318038)
	39-264, gnl\|dasNov1\|scaffold_4916 (59275-59772)
	39-264, gnl\|hg17\|chr11 (116668495-116668941)
	39-264, gnl\|Hg17\|chr11 (116668511-116668731)
	39-264, gnl\|mm7\|chr9 (45815776-45815412)
	39-264, gnl\|Mm7\|chr9 (45815914-45815553)
	39-264, gnl\|monDom2\|scaffold_2 (121997875-121997472)
	39-264, gnl\|panTro1\|chr9 (118670647-118671093)
	39-264, gnl\|rheMac2\|chr14 (115693582-115694031)
	39-264, gnl\|rn3\|chr8 (48845574-48845169)

	354-708, gnl\|bosTau2\|chr15 (13567070-13567423)
	354-708, gnl\|Hg17\|chr11 (116668803-116669160)
	354-708, gnl\|Mm7\|chr9 (45815506-45815192)